Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2B SuperfamilyCore histone-like8070535 3001387 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyCore histone-like8070535 3001387 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyCore histone-like8042439 3001387 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyCore histone-like8042439 3001387 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyCore histone-like8041278 3001387 SCOP2B (2022-06-29)
GSCOP2B SuperfamilyCore histone-like8041278 3001387 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyCore histone-like8041279 3001387 SCOP2B (2022-06-29)
HSCOP2B SuperfamilyCore histone-like8041279 3001387 SCOP2B (2022-06-29)
MSCOP2B SuperfamilyPFU(mutate) domain-like8055786 3002311 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
APF00125e6ltjA1 A: alpha arraysX: Histone-likeH: Histone-relatedT: HistoneF: PF00125ECOD (1.6)
EPF00125e6ltjE1 A: alpha arraysX: Histone-likeH: Histone-relatedT: HistoneF: PF00125ECOD (1.6)
BPF15511e6ltjB1 A: alpha arraysX: Histone-likeH: Histone-relatedT: HistoneF: PF15511ECOD (1.6)
FPF15511e6ltjF1 A: alpha arraysX: Histone-likeH: Histone-relatedT: HistoneF: PF15511ECOD (1.6)
CPF00125,PF16211e6ltjC1 A: alpha arraysX: Histone-likeH: Histone-relatedT: HistoneF: PF00125,PF16211ECOD (1.6)
GPF00125,PF16211e6ltjG1 A: alpha arraysX: Histone-likeH: Histone-relatedT: HistoneF: PF00125,PF16211ECOD (1.6)
DPF00125e6ltjD1 A: alpha arraysX: Histone-likeH: Histone-relatedT: HistoneF: PF00125ECOD (1.6)
HPF00125e6ltjH1 A: alpha arraysX: Histone-likeH: Histone-relatedT: HistoneF: PF00125ECOD (1.6)
JPF00022e6ltjJ2 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: PF00022ECOD (1.6)
KPF00022e6ltjK1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: PF00022ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, E
PF00125Core histone H2A/H2B/H3/H4 (Histone)Core histone H2A/H2B/H3/H4- Domain
B, F
PF15511Centromere kinetochore component CENP-T histone fold (CENP-T_C)Centromere kinetochore component CENP-T histone foldCENP-T is a family of vertebral kinetochore proteins that associates directly with CENP-W. The N-terminus of CENP-T proteins interacts directly with the Ndc80 complex in the outer kinetochore. Importantly, the CENP-T-W complex does not directly asso ...CENP-T is a family of vertebral kinetochore proteins that associates directly with CENP-W. The N-terminus of CENP-T proteins interacts directly with the Ndc80 complex in the outer kinetochore. Importantly, the CENP-T-W complex does not directly associate with CENP-A, but with histone H3 in the centromere region. CENP-T and -W form a hetero-tetramer with CENP-S and -X and bind to a ~100 bp region of nucleosome-free DNA forming a nucleosome-like structure. The DNA-CENP-T-W-S-X complex is likely to be associated with histone H3-containing nucleosomes rather than with CENP-nucleosomes. This domain is the C-terminal histone fold domain of CENP-T, which associates with chromatin [2-3].
Domain
C, G
PF16211C-terminus of histone H2A (Histone_H2A_C)C-terminus of histone H2A- Family
C, G
PF00125Core histone H2A/H2B/H3/H4 (Histone)Core histone H2A/H2B/H3/H4- Domain
D, H
PF00125Core histone H2A/H2B/H3/H4 (Histone)Core histone H2A/H2B/H3/H4- Domain
PF14619Snf2-ATP coupling, chromatin remodelling complex (SnAC)Snf2-ATP coupling, chromatin remodelling complexThis domain appears to play a crucial role in chromatin remodelling for yeast SWI/SNF. It binds histones. It is required for mobilising nucleosomes and lies within the catalytic subunit of the yeast SWI/SNF. It is found to be universally conserved [1 ...This domain appears to play a crucial role in chromatin remodelling for yeast SWI/SNF. It binds histones. It is required for mobilising nucleosomes and lies within the catalytic subunit of the yeast SWI/SNF. It is found to be universally conserved [1].
Domain
PF00271Helicase conserved C-terminal domain (Helicase_C)Helicase conserved C-terminal domainThe Prosite family is restricted to DEAD/H helicases, whereas this domain family is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase.Domain
PF00176SNF2-related domain (SNF2-rel_dom)SNF2-related domainThis domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as w ...This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1)[1,2,3]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors.
Domain
PF00022Actin (Actin)Actin- Family
PF00022Actin (Actin)Actin- Family
PF12031SWI/SNF-like complex subunit BAF250/Osa (BAF250_C)SWI/SNF-like complex subunit BAF250/Osa- Repeat
PF04855SNF5 / SMARCB1 / INI1 (SNF5)SNF5 / SMARCB1 / INI1- Family
N, O
PF00249Myb-like DNA-binding domain (Myb_DNA-binding)Myb-like DNA-binding domainThis family contains the DNA binding domains from Myb proteins, as well as the SANT domain family [1].Domain
N, O
PF16495SWIRM-associated region 1 (SWIRM-assoc_1)SWIRM-associated region 1- Family
N, O
PF04433SWIRM domain (SWIRM)SWIRM domainThis SWIRM domain is a small alpha-helical domain of about 85 amino acid residues found in chromosomal proteins. It contains a helix-turn helix motif and binds to DNA [1].Domain
PF02201SWIB/MDM2 domain (SWIB)SWIB/MDM2 domainThis family includes the SWIB domain and the MDM2 domain [1]. The p53-associated protein (MDM2) is an inhibitor of the p53 tumour suppressor gene binding the transactivation domain and down regulating the ability of p53 to activate transcription. Thi ...This family includes the SWIB domain and the MDM2 domain [1]. The p53-associated protein (MDM2) is an inhibitor of the p53 tumour suppressor gene binding the transactivation domain and down regulating the ability of p53 to activate transcription. This family contains the p53 binding domain of MDM2 [2].
Domain
PF14051DPF1-3, N-terminal (DPF1-3_N)DPF1-3, N-terminal- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, E
Histone H3.3 -
B, F
Histone H4 -
C, G
Histone H2A type 1 -
D, H
Histone H2B -
Transcription activator BRG1
Actin-like protein 6A
Actin, cytoplasmic 1
AT-rich interactive domain-containing protein 1A
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1
N, O
SWI/SNF complex subunit SMARCC2
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1
Zinc finger protein ubi-d4
S [auth X]DNA (119-MER)---
T [auth Y]DNA (119-MER)---

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, E
IPR009072Histone-foldHomologous Superfamily
A, E
IPR007125Histone H2A/H2B/H3Domain
A, E
IPR000164Histone H3/CENP-AFamily
B, F
IPR009072Histone-foldHomologous Superfamily
B, F
IPR001951Histone H4Family
B, F
IPR035425CENP-T/Histone H4, histone foldDomain
B, F
IPR019809Histone H4, conserved siteConserved Site
B, F
IPR004823TATA box binding protein associated factor (TAF), histone-like fold domainDomain
C, G
IPR009072Histone-foldHomologous Superfamily
C, G
IPR007125Histone H2A/H2B/H3Domain
C, G
IPR002119Histone H2AFamily
C, G
IPR032454Histone H2A, C-terminal domainDomain
C, G
IPR032458Histone H2A conserved siteConserved Site
D, H
IPR009072Histone-foldHomologous Superfamily
D, H
IPR007125Histone H2A/H2B/H3Domain
D, H
IPR000558Histone H2BFamily
IPR030100SWI/SNF complex subunit BRG1, ATP-bindingDomain
IPR018359Bromodomain, conserved siteConserved Site
IPR014978Glutamine-Leucine-Glutamine, QLQDomain
IPR006576BRK domainDomain
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
IPR037259BRK domain superfamilyHomologous Superfamily
IPR001650Helicase, C-terminal domain-likeDomain
IPR014001Helicase superfamily 1/2, ATP-binding domainDomain
IPR036427Bromodomain-like superfamilyHomologous Superfamily
IPR029295Snf2, ATP coupling domainDomain
IPR000330SNF2, N-terminalDomain
IPR001487BromodomainDomain
IPR038718SNF2-like, N-terminal domain superfamilyHomologous Superfamily
IPR014012Helicase/SANT-associated domainDomain
IPR004001Actin, conserved siteConserved Site
IPR043129ATPase, nucleotide binding domainHomologous Superfamily
IPR004000Actin familyFamily
IPR020902Actin/actin-like conserved siteConserved Site
IPR004001Actin, conserved siteConserved Site
IPR043129ATPase, nucleotide binding domainHomologous Superfamily
IPR004000Actin familyFamily
IPR030094AT-rich interactive domain-containing protein 1A, ARID/BRIGHT DNA binding domainDomain
IPR016024Armadillo-type foldHomologous Superfamily
IPR001606ARID DNA-binding domainDomain
IPR011989Armadillo-like helicalHomologous Superfamily
IPR021906SWI/SNF-like complex subunit BAF250/OsaFamily
IPR033388SWI/SNF-like complex subunit BAF250, C-terminalDomain
IPR036431ARID DNA-binding domain superfamilyHomologous Superfamily
IPR048664SWI/SNF Subunit INI1, DNA binding domainDomain
IPR017393Chromatin-remodeling complex component Sfh1/SNF5Family
IPR006939SNF5/SMARCB1/INI1Family
N, O
IPR009057Homeobox-like domain superfamilyHomologous Superfamily
N, O
IPR032451SMARCC, C-terminalDomain
N, O
IPR036420BRCT domain superfamilyHomologous Superfamily
N, O
IPR000953Chromo/chromo shadow domainDomain
N, O
IPR032450SMARCC, N-terminalDomain
N, O
IPR032448SMARCC, SWIRM-associated domainDomain
N, O
IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
N, O
IPR017884SANT domainDomain
N, O
IPR001005SANT/Myb domainDomain
N, O
IPR007526SWIRM domainDomain
IPR003121SWIB/MDM2 domainDomain
IPR038041SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D 1, SWIB domainDomain
IPR036885SWIB/MDM2 domain superfamilyHomologous Superfamily
IPR019835SWIB domainDomain
IPR009071High mobility group box domainDomain
IPR036910High mobility group box domain superfamilyHomologous Superfamily
IPR001965Zinc finger, PHD-typeDomain
IPR013087Zinc finger C2H2-typeDomain
IPR036236Zinc finger C2H2 superfamilyHomologous Superfamily
IPR025750DPF1-3, N-terminal domainDomain
IPR019787Zinc finger, PHD-fingerDomain
IPR011011Zinc finger, FYVE/PHD-typeHomologous Superfamily
IPR013083Zinc finger, RING/FYVE/PHD-typeHomologous Superfamily

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
PharosP51532
PharosO96019
PharosP60709
PharosO14497
PharosQ12824
N, O
PharosQ8TAQ2
PharosQ96GM5
PharosQ969G3
PharosQ92785