6TH6

Cryo-EM Structure of T. kodakarensis 70S ribosome


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
B [auth Ab]SCOP2B SuperfamilySIS domain/Ribosomal protein S2-like8099654 3001397 SCOP2B (2022-06-29)
D [auth Ad]SCOP2 FamilyRibosomal S3Ae8099631 4006095 SCOP2 (2022-06-29)
D [auth Ad]SCOP2 SuperfamilyRibosomal S3Ae-like8099632 3002166 SCOP2 (2022-06-29)
H [auth Ah]SCOP2 FamilyRibosomal protein S6e8099615 4006143 SCOP2 (2022-06-29)
H [auth Ah]SCOP2 SuperfamilyGS N-terminal domain-like8099616 3000408 SCOP2 (2022-06-29)
I [auth Ai]SCOP2B SuperfamilyRibosomal protein S78099620 3000799 SCOP2B (2022-06-29)
J [auth Aj]SCOP2B SuperfamilyRibosomal protein S88099678 3000709 SCOP2B (2022-06-29)
K [auth Ak]SCOP2 FamilyRibosomal protein S8e8099629 4006189 SCOP2 (2022-06-29)
K [auth Ak]SCOP2 Superfamily50S Ribosomal protein L14-like8099630 3000433 SCOP2 (2022-06-29)
L [auth Al]SCOP2 FamilyTranslational machinery components8099655 4000951 SCOP2 (2022-06-29)
L [auth Al]SCOP2 SuperfamilyRibosomal protein S5 domain 2-like8099656 3000100 SCOP2 (2022-06-29)
M [auth Am]SCOP2 FamilyRibosomal protein S108099627 4001240 SCOP2 (2022-06-29)
M [auth Am]SCOP2 SuperfamilyRibosomal protein S108099628 3001336 SCOP2 (2022-06-29)
N [auth An]SCOP2 FamilyRibosomal protein L18p and S118099661 4000555 SCOP2 (2022-06-29)
N [auth An]SCOP2 SuperfamilyTranslational machinery components8099662 3000571 SCOP2 (2022-06-29)
P [auth Ap]SCOP2 FamilyRibosomal protein S138099659 4000260 SCOP2 (2022-06-29)
P [auth Ap]SCOP2 SuperfamilyS13-like H2TH domain8099660 3000053 SCOP2 (2022-06-29)
R [auth Ar]SCOP2 FamilyRibosomal protein S14p/S29e8099675 4003647 SCOP2 (2022-06-29)
R [auth Ar]SCOP2 SuperfamilyGlucocorticoid receptor-like (DNA-binding domain)8099676 3000068 SCOP2 (2022-06-29)
T [auth At]SCOP2 FamilyRps17e-like8099601 4002889 SCOP2 (2022-06-29)
T [auth At]SCOP2 SuperfamilyRps17e-like8099602 3001852 SCOP2 (2022-06-29)
V [auth Av]SCOP2 FamilyRps19E-like8099633 4000222 SCOP2 (2022-06-29)
V [auth Av]SCOP2 SuperfamilyWinged helix DNA-binding domain8099634 3000034 SCOP2 (2022-06-29)
W [auth Aw]SCOP2 FamilyRibosomal protein S24e8099651 4003636 SCOP2 (2022-06-29)
W [auth Aw]SCOP2 SuperfamilyRibosomal proteins S24e L23 and L15e8099652 3000210 SCOP2 (2022-06-29)
X [auth Ax]SCOP2 FamilyRibosomal protein S27e8099623 4003887 SCOP2 (2022-06-29)
X [auth Ax]SCOP2 SuperfamilyZn-binding ribosomal proteins8099624 3001320 SCOP2 (2022-06-29)
Y [auth Ay]SCOP2 FamilyCold shock DNA-binding domain-like8099637 4001909 SCOP2 (2022-06-29)
Y [auth Ay]SCOP2 SuperfamilyNucleic acid-binding proteins8099638 3000135 SCOP2 (2022-06-29)
DA [auth BD]SCOP2 FamilyRibosomal protein L38099613 4002103 SCOP2 (2022-06-29)
DA [auth BD]SCOP2 SuperfamilyTranslational proteins8099614 3000811 SCOP2 (2022-06-29)
EA [auth BE]SCOP2 FamilyRibosomal protein L48099609 4003628 SCOP2 (2022-06-29)
EA [auth BE]SCOP2 SuperfamilyRibosomal protein L48099610 3001146 SCOP2 (2022-06-29)
FA [auth BF]SCOP2B SuperfamilyRL5-like8099674 3001709 SCOP2B (2022-06-29)
HA [auth BH]SCOP2B SuperfamilyL30e-like8099636 3001739 SCOP2B (2022-06-29)
IA [auth BI]SCOP2 FamilyL30e/L7ae ribosomal proteins8099635 4001513 SCOP2 (2022-06-29)
IA [auth BI]SCOP2 SuperfamilyL30e-like8099636 3001739 SCOP2 (2022-06-29)
JA [auth BJ]SCOP2B SuperfamilyRibosomal protein L16p/L10e8099612 3000884 SCOP2B (2022-06-29)
KA [auth BK]SCOP2 FamilyRibosomal protein L138099665 4003623 SCOP2 (2022-06-29)
KA [auth BK]SCOP2 SuperfamilyRibosomal protein L138099666 3001134 SCOP2 (2022-06-29)
LA [auth BL]SCOP2 FamilyRibosomal protein L148099669 4001826 SCOP2 (2022-06-29)
LA [auth BL]SCOP2 Superfamily50S Ribosomal protein L14-like8099670 3000433 SCOP2 (2022-06-29)
MA [auth BM]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain8099658 3000334 SCOP2B (2022-06-29)
NA [auth BN]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain8099658 3000334 SCOP2B (2022-06-29)
OA [auth BO]SCOP2 FamilyRibosomal proteins L15p and L18e8099687 4003555 SCOP2 (2022-06-29)
OA [auth BO]SCOP2 SuperfamilyRibosomal proteins L15p and L18e8099688 3001045 SCOP2 (2022-06-29)
PA [auth BP]SCOP2 FamilyL15e8099645 4000945 SCOP2 (2022-06-29)
PA [auth BP]SCOP2 SuperfamilyRibosomal proteins S24e L23 and L15e8099646 3000210 SCOP2 (2022-06-29)
QA [auth BQ]SCOP2B SuperfamilyTranslational machinery components8099684 3000571 SCOP2B (2022-06-29)
RA [auth BR]SCOP2 FamilyRibosomal proteins L15p and L18e8099663 4003555 SCOP2 (2022-06-29)
RA [auth BR]SCOP2 SuperfamilyRibosomal proteins L15p and L18e8099664 3001045 SCOP2 (2022-06-29)
SA [auth BS]SCOP2 FamilyRibosomal protein L19 (L19e)8099681 4001138 SCOP2 (2022-06-29)
SA [auth BS]SCOP2 SuperfamilyRibosomal protein L19 (L19e)8099682 3000890 SCOP2 (2022-06-29)
TA [auth BT]SCOP2 FamilyRplX-like8099639 4002003 SCOP2 (2022-06-29)
TA [auth BT]SCOP2 SuperfamilyRplX-like8099640 3000673 SCOP2 (2022-06-29)
UA [auth BU]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain8099648 3000334 SCOP2B (2022-06-29)
VA [auth BV]SCOP2 FamilyRibosomal protein L228099605 4001212 SCOP2 (2022-06-29)
VA [auth BV]SCOP2 SuperfamilyRibosomal protein L228099606 3001078 SCOP2 (2022-06-29)
WA [auth BW]SCOP2 FamilyL23p8099603 4000943 SCOP2 (2022-06-29)
WA [auth BW]SCOP2 SuperfamilyRibosomal proteins S24e L23 and L15e8099604 3000210 SCOP2 (2022-06-29)
XA [auth BX]SCOP2 FamilyRibosomal proteins L24p and L21e8099671 4001752 SCOP2 (2022-06-29)
XA [auth BX]SCOP2 SuperfamilyTranslation proteins SH3-like KOW motif containing domain8099672 3000334 SCOP2 (2022-06-29)
ZA [auth BZ]SCOP2 FamilyRibosomal protein L29 (L29p)8099607 4000600 SCOP2 (2022-06-29)
ZA [auth BZ]SCOP2 SuperfamilyRibosomal protein L29 (L29p)8099608 3000713 SCOP2 (2022-06-29)
AB [auth Ba]SCOP2B SuperfamilyRibosomal protein L30p/L7e8099686 3001378 SCOP2B (2022-06-29)
BB [auth Bb]SCOP2 FamilyL30e/L7ae ribosomal proteins8099621 4001513 SCOP2 (2022-06-29)
BB [auth Bb]SCOP2 SuperfamilyL30e-like8099622 3001739 SCOP2 (2022-06-29)
CB [auth Bc]SCOP2 FamilyRibosomal protein L31e8099641 4001085 SCOP2 (2022-06-29)
CB [auth Bc]SCOP2 SuperfamilyRibosomal protein L31e8099642 3000699 SCOP2 (2022-06-29)
DB [auth Bd]SCOP2 FamilyRibosomal protein L32e8099679 4003517 SCOP2 (2022-06-29)
DB [auth Bd]SCOP2 SuperfamilyRibosomal protein L32e8099680 3000982 SCOP2 (2022-06-29)
EB [auth Be]SCOP2 FamilyRibosomal protein L34e-like8099667 4006193 SCOP2 (2022-06-29)
EB [auth Be]SCOP2 SuperfamilyRibosomal protein L34e-like8099668 3002203 SCOP2 (2022-06-29)
FB [auth Bg]SCOP2 FamilyRibosomal protein L37ae8099617 4003704 SCOP2 (2022-06-29)
FB [auth Bg]SCOP2 SuperfamilyZn-binding ribosomal proteins8099618 3001320 SCOP2 (2022-06-29)
GB [auth Bh]SCOP2 FamilyRibosomal protein L37e8099649 4003706 SCOP2 (2022-06-29)
GB [auth Bh]SCOP2 SuperfamilyZn-binding ribosomal proteins8099650 3001320 SCOP2 (2022-06-29)
HB [auth Bi]SCOP2 Familyribosomal protein l39e8099643 4001518 SCOP2 (2022-06-29)
HB [auth Bi]SCOP2 SuperfamilyRibosomal protein L39e8099644 3001756 SCOP2 (2022-06-29)
KB [auth Bl]SCOP2 FamilyRibosomal protein L44e8099625 4003711 SCOP2 (2022-06-29)
KB [auth Bl]SCOP2 SuperfamilyZn-binding ribosomal proteins8099626 3001320 SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
B [auth Ab]Ribosomal_S2_2e6th6Ab1 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Ribosomal protein S2/SIS domain (From Topology)T: Ribosomal protein S2/SIS domainF: Ribosomal_S2_2ECOD (1.6)
C [auth Ac]Ribosomal_S3_Ce6th6Ac1 A: a+b two layersX: T-foldH: Ribosomal protein S3-C (From Topology)T: Ribosomal protein S3-CF: Ribosomal_S3_CECOD (1.6)
C [auth Ac]KH_2_2e6th6Ac2 A: a+b two layersX: Alpha-lytic protease prodomain-likeH: KH-domainsT: Prokaryotic type KH domain (KH-domain type II)F: KH_2_2ECOD (1.6)
D [auth Ad]Ribosomal_S3Ae_Ne6th6Ad1 A: beta barrelsX: Ribosomal protein L25-likeH: 40S ribosomal protein S3A N-terminal domain (From Topology)T: 40S ribosomal protein S3A N-terminal domainF: Ribosomal_S3Ae_NECOD (1.6)
D [auth Ad]Ribosomal_S3Ae_Ce6th6Ad2 A: a+b two layersX: T-foldH: 40S ribosomal protein S3A C-terminal domain (From Topology)T: 40S ribosomal protein S3A C-terminal domainF: Ribosomal_S3Ae_CECOD (1.6)
E [auth Ae]S4e6th6Ae1 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Alpha-L RNA-binding motifF: S4ECOD (1.6)
F [auth Af]UNK_F_TYPEe6th6Af3 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: UNK_F_TYPEECOD (1.6)
F [auth Af]KOW_1e6th6Af1 A: beta barrelsX: SH3H: SH3T: SH3F: KOW_1ECOD (1.6)
F [auth Af]RS4NTe6th6Af2 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Alpha-L RNA-binding motifF: RS4NTECOD (1.6)
H [auth Ah]Ribosomal_S6ee6th6Ah1 A: beta barrelsX: Ribosomal protein L25-likeH: Ribosomal protein L25-like (From Topology)T: Ribosomal protein L25-likeF: Ribosomal_S6eECOD (1.6)
I [auth Ai]Ribosomal_S7e6th6Ai1 A: alpha arraysX: Ribosomal protein S7 (From Topology)H: Ribosomal protein S7 (From Topology)T: Ribosomal protein S7F: Ribosomal_S7ECOD (1.6)
J [auth Aj]Ribosomal_S8_N_1e6th6Aj2 A: a+b two layersX: R3H domain-likeH: Ribosomal protein S8, N-terminal domain (From Topology)T: Ribosomal protein S8, N-terminal domainF: Ribosomal_S8_N_1ECOD (1.6)
J [auth Aj]Ribosomal_S8_C_1e6th6Aj1 A: a+b two layersX: Ribosomal protein S8, C-terminal domain (From Topology)H: Ribosomal protein S8, C-terminal domain (From Topology)T: Ribosomal protein S8, C-terminal domainF: Ribosomal_S8_C_1ECOD (1.6)
K [auth Ak]Ribosomal_S8ee6th6Ak1 A: beta barrelsX: Ribosomal protein L14-likeH: Ribosomal protein L14-related (From Topology)T: Ribosomal protein L14-relatedF: Ribosomal_S8eECOD (1.6)
L [auth Al]Ribosomal_S9e6th6Al1 A: a+b two layersX: Ribosomal protein S5 domain 2-like (From Topology)H: Ribosomal protein S5 domain 2-like (From Topology)T: Ribosomal protein S5 domain 2-likeF: Ribosomal_S9ECOD (1.6)
M [auth Am]Ribosomal_S10_1e6th6Am1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal protein S10 (From Topology)T: Ribosomal protein S10F: Ribosomal_S10_1ECOD (1.6)
N [auth An]Ribosomal_S11e6th6An1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: Ribosomal_S11ECOD (1.6)
O [auth Ao]Ribosom_S12_S23e6th6Ao1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: Ribosom_S12_S23ECOD (1.6)
P [auth Ap]Ribosomal_S13e6th6Ap1 A: alpha arraysX: HhH/H2THH: H2TH (From Topology)T: H2THF: Ribosomal_S13ECOD (1.6)
Q [auth Aq]Ribosomal_S13_N_1e6th6Aq1 A: alpha arraysX: HTHH: 40S ribosomal protein S13 N-terminal domain (From Topology)T: 40S ribosomal protein S13 N-terminal domainF: Ribosomal_S13_N_1ECOD (1.6)
Q [auth Aq]Ribosomal_S15_2e6th6Aq2 A: alpha arraysX: S15/NS1 RNA-binding domain (From Topology)H: S15/NS1 RNA-binding domain (From Topology)T: S15/NS1 RNA-binding domainF: Ribosomal_S15_2ECOD (1.6)
R [auth Ar]Ribosomal_S14_2e6th6Ar1 A: few secondary structure elementsX: Glucocorticoid receptor-likeH: LIM domain-likeT: LIM domain-likeF: Ribosomal_S14_2ECOD (1.6)
S [auth As]Ribosomal_S17_1e6th6As1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: Ribosomal_S17_1ECOD (1.6)
T [auth At]Ribosomal_S17ee6th6At1 A: alpha arraysX: HTHH: HTHT: FF domainF: Ribosomal_S17eECOD (1.6)
U [auth Au]Ribosomal_S19e6th6Au1 A: a+b two layersX: Ribosomal protein S19 (From Topology)H: Ribosomal protein S19 (From Topology)T: Ribosomal protein S19F: Ribosomal_S19ECOD (1.6)
V [auth Av]Ribosomal_S19ee6th6Av1 A: alpha arraysX: HTHH: HTHT: wingedF: Ribosomal_S19eECOD (1.6)
W [auth Aw]Ribosomal_S24ee6th6Aw1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: Ribosomal_S24eECOD (1.6)
X [auth Ax]Ribosomal_S27ee6th6Ax1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Ribosomal_S27eECOD (1.6)
Y [auth Ay]Ribosomal_S28ee6th6Ay1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: Ribosomal_S28eECOD (1.6)
Z [auth Az]HypA,zf-C2H2_19e6th6Az1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: HypA,zf-C2H2_19ECOD (1.6)
CA [auth BC]Ribosomal_L2_1e6th6BC2 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: Ribosomal_L2_1ECOD (1.6)
CA [auth BC]Ribosomal_L2_C_2e6th6BC1 A: beta barrelsX: SH3H: SH3T: SH3F: Ribosomal_L2_C_2ECOD (1.6)
DA [auth BD]Ribosomal_L3e6th6BD1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: Ribosomal_L3ECOD (1.6)
EA [auth BE]Ribosomal_L4e6th6BE1 A: a/b three-layered sandwichesX: Ribosomal protein L4 (From Topology)H: Ribosomal protein L4 (From Topology)T: Ribosomal protein L4F: Ribosomal_L4ECOD (1.6)
FA [auth BF]Ribosomal_L5_Ce6th6BF1 A: a+b two layersX: Ribosomal protein L5 (From Topology)H: Ribosomal protein L5 (From Topology)T: Ribosomal protein L5F: Ribosomal_L5_CECOD (1.6)
GA [auth BG]Ribosomal_L6_2e6th6BG1 A: a+b two layersX: Ribosomal protein L6 (From Topology)H: Ribosomal protein L6 (From Topology)T: Ribosomal protein L6F: Ribosomal_L6_2ECOD (1.6)
GA [auth BG]Ribosomal_L6e6th6BG2 A: a+b two layersX: Ribosomal protein L6 (From Topology)H: Ribosomal protein L6 (From Topology)T: Ribosomal protein L6F: Ribosomal_L6ECOD (1.6)
HA [auth BH]Ribosomal_L7Ae_1e6th6BH1 A: a+b three layersX: Bacillus chorismate mutase-likeH: L30e-like (From Topology)T: L30e-likeF: Ribosomal_L7Ae_1ECOD (1.6)
IA [auth BI]Ribosomal_L7Ae_1e6th6BI1 A: a+b three layersX: Bacillus chorismate mutase-likeH: L30e-like (From Topology)T: L30e-likeF: Ribosomal_L7Ae_1ECOD (1.6)
JA [auth BJ]Ribosomal_L16e6th6BJ1 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Ribosomal protein L10eF: Ribosomal_L16ECOD (1.6)
KA [auth BK]Ribosomal_L13e6th6BK1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal protein L13 and L16-A (From Topology)T: Ribosomal protein L13 and L16-AF: Ribosomal_L13ECOD (1.6)
LA [auth BL]Ribosomal_L14e6th6BL1 A: beta barrelsX: Ribosomal protein L14-likeH: Ribosomal protein L14-related (From Topology)T: Ribosomal protein L14-relatedF: Ribosomal_L14ECOD (1.6)
MA [auth BM]Ribosomal_L14ee6th6BM1 A: beta barrelsX: SH3H: SH3T: SH3F: Ribosomal_L14eECOD (1.6)
NA [auth BN]Ribosomal_L14ee6th6BN1 A: beta barrelsX: SH3H: SH3T: SH3F: Ribosomal_L14eECOD (1.6)
OA [auth BO]Ribosomal_L18e6th6BO1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal proteins L15p and L18e (From Topology)T: Ribosomal proteins L15p and L18eF: Ribosomal_L18ECOD (1.6)
PA [auth BP]Ribosomal_L15ee6th6BP1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: Ribosomal_L15eECOD (1.6)
QA [auth BQ]Ribosomal_L5ee6th6BQ1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: Ribosomal_L5eECOD (1.6)
RA [auth BR]Ribosomal_L18e6th6BR1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal proteins L15p and L18e (From Topology)T: Ribosomal proteins L15p and L18eF: Ribosomal_L18ECOD (1.6)
SA [auth BS]Ribosomal_L19e_Ne6th6BS1 A: alpha arraysX: Ribosomal protein L19 (L19e) N-terminal domain (From Topology)H: Ribosomal protein L19 (L19e) N-terminal domain (From Topology)T: Ribosomal protein L19 (L19e) N-terminal domainF: Ribosomal_L19e_NECOD (1.6)
SA [auth BS]Ribosomal_L19e_Ce6th6BS2 A: alpha bundlesX: Ribosomal protein L19 (L19e) C-terminal domain (From Topology)H: Ribosomal protein L19 (L19e) C-terminal domain (From Topology)T: Ribosomal protein L19 (L19e) C-terminal domainF: Ribosomal_L19e_CECOD (1.6)
TA [auth BT]Ribosomal_L18Ae6th6BT1 A: a+b two layersX: GP2-likeH: RplX-like (From Topology)T: RplX-likeF: Ribosomal_L18AECOD (1.6)
UA [auth BU]Ribosomal_L21ee6th6BU1 A: beta barrelsX: SH3H: SH3T: SH3F: Ribosomal_L21eECOD (1.6)
VA [auth BV]Ribosomal_L22e6th6BV1 A: a+b two layersX: Enolase-N/ribosomal proteinH: Ribosomal protein L22 (From Topology)T: Ribosomal protein L22F: Ribosomal_L22ECOD (1.6)
WA [auth BW]Ribosomal_L23_1e6th6BW1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: Ribosomal_L23_1ECOD (1.6)
XA [auth BX]Ribosomal_L26e6th6BX1 A: beta barrelsX: SH3H: SH3T: SH3F: Ribosomal_L26ECOD (1.6)
YA [auth BY]Ribosomal_L24ee6th6BY1 A: few secondary structure elementsX: Glucocorticoid receptor-likeH: LIM domain-likeT: LIM domain-likeF: Ribosomal_L24eECOD (1.6)
ZA [auth BZ]Ribosomal_L29e6th6BZ1 A: alpha bundlesX: Long alpha-hairpinH: Ribosomal protein L29 (L29p) (From Topology)T: Ribosomal protein L29 (L29p)F: Ribosomal_L29ECOD (1.6)
AB [auth Ba]Ribosomal_L30_1e6th6Ba1 A: a+b two layersX: Ribosomal protein L30p/L7e (From Topology)H: Ribosomal protein L30p/L7e (From Topology)T: Ribosomal protein L30p/L7eF: Ribosomal_L30_1ECOD (1.6)
BB [auth Bb]Ribosomal_L7Aee6th6Bb1 A: a+b three layersX: Bacillus chorismate mutase-likeH: L30e-like (From Topology)T: L30e-likeF: Ribosomal_L7AeECOD (1.6)
CB [auth Bc]Ribosomal_L31ee6th6Bc1 A: a+b two layersX: Ribosomal protein L31e-likeH: Ribosomal protein L31e/gp120 outer domain (From Topology)T: Ribosomal protein L31e/gp120 outer domainF: Ribosomal_L31eECOD (1.6)
DB [auth Bd]Ribosomal_L32ee6th6Bd1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal protein L32e (From Topology)T: Ribosomal protein L32eF: Ribosomal_L32eECOD (1.6)
EB [auth Be]Ribosomal_L34ee6th6Be1 A: few secondary structure elementsX: Glucocorticoid receptor-likeH: RPL34 (From Topology)T: RPL34F: Ribosomal_L34eECOD (1.6)
FB [auth Bg]Ribosomal_L37aee6th6Bg1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Ribosomal_L37aeECOD (1.6)
GB [auth Bh]Ribosomal_L37ee6th6Bh1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Ribosomal_L37eECOD (1.6)
HB [auth Bi]Ribosomal_L39e6th6Bi1 A: extended segmentsX: Ribosomal protein L39e (From Topology)H: Ribosomal protein L39e (From Topology)T: Ribosomal protein L39eF: Ribosomal_L39ECOD (1.6)
IB [auth Bj]rpl40ee6th6Bj1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: rpl40eECOD (1.6)
JB [auth Bk]Ribosomal_L41_2e6th6Bk1 A: extended segmentsX: Ribosomal protein L41-A (From Topology)H: Ribosomal protein L41-A (From Topology)T: Ribosomal protein L41-AF: Ribosomal_L41_2ECOD (1.6)
KB [auth Bl]Ribosomal_L44e6th6Bl1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Ribosomal_L44ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
B [auth Ab]PF00318Ribosomal protein S2 (Ribosomal_S2)Ribosomal protein S2- Family
C [auth Ac]PF07650KH domain (KH_2)KH domain- Domain
C [auth Ac]PF00189Ribosomal protein S3, C-terminal domain (Ribosomal_S3_C)Ribosomal protein S3, C-terminal domainThis family contains a central domain Pfam:PF00013, hence the amino and carboxyl terminal domains are stored separately. This is a minimal carboxyl-terminal domain. Some are much longer.Domain
D [auth Ad]PF01015Ribosomal S3Ae family (Ribosomal_S3Ae)Ribosomal S3Ae family- Family
E [auth Ae]PF01479S4 domain (S4)S4 domainThe S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ...The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation [1]. The S4 domain probably mediates binding to RNA.
Domain
F [auth Af]PF00900Ribosomal family S4e (Ribosomal_S4e)Ribosomal family S4e- Family
F [auth Af]PF08071RS4NT (NUC023) domain (RS4NT)RS4NT (NUC023) domainThis is the N-terminal domain of Ribosomal S4 / S4e proteins. This domain is associated with S4 and KOW domains [1].Domain
F [auth Af]PF01479S4 domain (S4)S4 domainThe S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ...The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation [1]. The S4 domain probably mediates binding to RNA.
Domain
G [auth Ag]PF03719Ribosomal protein S5, C-terminal domain (Ribosomal_S5_C)Ribosomal protein S5, C-terminal domain- Domain
G [auth Ag]PF00333Ribosomal protein S5, N-terminal domain (Ribosomal_S5)Ribosomal protein S5, N-terminal domain- Domain
H [auth Ah]PF01092Ribosomal protein S6e (Ribosomal_S6e)Ribosomal protein S6e- Family
I [auth Ai]PF00177Ribosomal protein S7p/S5e (Ribosomal_S7)Ribosomal protein S7p/S5eThis family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes.Domain
J [auth Aj]PF00410Ribosomal protein S8 (Ribosomal_S8)Ribosomal protein S8- Domain
K [auth Ak]PF01201Ribosomal protein S8e (Ribosomal_S8e)Ribosomal protein S8e- Family
L [auth Al]PF00380Ribosomal protein S9/S16 (Ribosomal_S9)Ribosomal protein S9/S16- Family
M [auth Am]PF00338Ribosomal protein S10p/S20e (Ribosomal_S10)Ribosomal protein S10p/S20eThis family includes small ribosomal subunit S10 from prokaryotes and S20 from eukaryotes.Domain
N [auth An]PF00411Ribosomal protein S11 (Ribosomal_S11)Ribosomal protein S11- Family
O [auth Ao]PF00164Ribosomal protein S12/S23 (Ribosom_S12_S23)Ribosomal protein S12/S23- Family
P [auth Ap]PF00416Ribosomal protein S13/S18 (Ribosomal_S13)Ribosomal protein S13/S18- Family
Q [auth Aq]PF08069Ribosomal S13/S15 N-terminal domain (Ribosomal_S13_N)Ribosomal S13/S15 N-terminal domainThis domain is found at the N-terminus of ribosomal S13 and S15 proteins. This domain is also identified as NUC021 [1].Domain
Q [auth Aq]PF00312Ribosomal protein S15 (Ribosomal_S15)Ribosomal protein S15- Domain
R [auth Ar]PF00253Ribosomal protein S14p/S29e (Ribosomal_S14)Ribosomal protein S14p/S29e- Family
S [auth As]PF00366Ribosomal protein S17 (Ribosomal_S17)Ribosomal protein S17- Domain
T [auth At]PF00833Ribosomal S17 (Ribosomal_S17e)Ribosomal S17- Family
U [auth Au]PF00203Ribosomal protein S19 (Ribosomal_S19)Ribosomal protein S19- Domain
V [auth Av]PF01090Ribosomal protein S19e (Ribosomal_S19e)Ribosomal protein S19e- Family
W [auth Aw]PF01282Ribosomal protein S24e (Ribosomal_S24e)Ribosomal protein S24e- Family
X [auth Ax]PF01667Ribosomal protein S27 (Ribosomal_S27e)Ribosomal protein S27- Family
Y [auth Ay]PF01200Ribosomal protein S28e (Ribosomal_S28e)Ribosomal protein S28e- Family
Z [auth Az]PF07754Small zinc finger protein HVO_2753-like, Zn-binding pocket (HVO_2753_ZBP)Small zinc finger protein HVO_2753-like, Zn-binding pocketThis domain is found in many archaeal proteins, including HVO_2753 (also known as Small CPxCG-related zinc finger protein) from Haloferax volcanii [1]. NMR 3D structure analysis revealed the content of four C(P)XCG motifs, suggesting the presence of ...This domain is found in many archaeal proteins, including HVO_2753 (also known as Small CPxCG-related zinc finger protein) from Haloferax volcanii [1]. NMR 3D structure analysis revealed the content of four C(P)XCG motifs, suggesting the presence of two zinc-binding pockets (ZBPs). However, only C(P)XCG motifs 2 and 4 (comprising Cys-32 to Cys-35 and Cys-50 to Cys-53) form a ZBP and binds one zinc atom, while C(P)XCG motifs 1 and 3 (comprising Cys-12 to Cys-15 and Cys-39 to Cys-42) form a four-Cys cluster that do not bind zinc. The four C(P)XCG motifs are critical for protein stability, folding and functionality [1]. This domain can also be present in small zinc finger proteins from bacteria and eukaryotes.
Domain
CA [auth BC]PF03947Ribosomal Proteins L2, C-terminal domain (Ribosomal_L2_C)Ribosomal Proteins L2, C-terminal domain- Domain
CA [auth BC]PF00181Ribosomal Proteins L2, RNA binding domain (Ribosomal_L2)Ribosomal Proteins L2, RNA binding domain- Domain
DA [auth BD]PF00297Ribosomal protein L3 (Ribosomal_L3)Ribosomal protein L3- Family
EA [auth BE]PF00573Ribosomal protein L4/L1 family (Ribosomal_L4)Ribosomal protein L4/L1 family- Family
FA [auth BF]PF00281Ribosomal protein L5 (Ribosomal_L5)Ribosomal protein L5- Domain
FA [auth BF]PF00673ribosomal L5P family C-terminus (Ribosomal_L5_C)ribosomal L5P family C-terminusThis region is found associated with Pfam:PF00281.Domain
GA [auth BG]PF00347Ribosomal protein L6 (Ribosomal_L6)Ribosomal protein L6- Domain
HA [auth BH],
IA [auth BI]
PF01248Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae)Ribosomal protein L7Ae/L30e/S12e/Gadd45 familyThis family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ...This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118 [1].
Domain
JA [auth BJ]PF00252Ribosomal protein L16p/L10e (Ribosomal_L16)Ribosomal protein L16p/L10e- Domain
KA [auth BK]PF00572Ribosomal protein L13 (Ribosomal_L13)Ribosomal protein L13- Family
LA [auth BL]PF00238Ribosomal protein L14p/L23e (Ribosomal_L14)Ribosomal protein L14p/L23e- Domain
OA [auth BO]PF00828Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A (Ribosomal_L27A)Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A- Family
PA [auth BP]PF00827Ribosomal L15 (Ribosomal_L15e)Ribosomal L15- Family
QA [auth BQ]PF17144Ribosomal large subunit proteins 60S L5, and 50S L18 (Ribosomal_L5e)Ribosomal large subunit proteins 60S L5, and 50S L18- Family
RA [auth BR]PF17135Ribosomal protein 60S L18 and 50S L18e (Ribosomal_L18)Ribosomal protein 60S L18 and 50S L18e- Family
SA [auth BS]PF01280Ribosomal protein L19e (Ribosomal_L19e)Ribosomal protein L19e- Family
TA [auth BT]PF01775Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A (Ribosomal_L18A)Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18AThis family includes: archaeal 50S ribosomal protein L18Ae, often referred to as L20e or LX; fungal 60S ribosomal protein L20; and higher eukaryote 60S ribosomal protein L18A.Domain
UA [auth BU]PF01157Ribosomal protein L21e (Ribosomal_L21e)Ribosomal protein L21e- Family
VA [auth BV]PF00237Ribosomal protein L22p/L17e (Ribosomal_L22)Ribosomal protein L22p/L17eThis family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes.Domain
WA [auth BW]PF00276Ribosomal protein L23 (Ribosomal_L23)Ribosomal protein L23- Family
XA [auth BX]PF16906Ribosomal proteins L26 eukaryotic, L24P archaeal (Ribosomal_L26)Ribosomal proteins L26 eukaryotic, L24P archaeal- Family
XA [auth BX]PF00467KOW motif (KOW)KOW motif- Family
YA [auth BY]PF01246Ribosomal protein L24e (Ribosomal_L24e)Ribosomal protein L24e- Domain
ZA [auth BZ]PF00831Ribosomal L29 protein (Ribosomal_L29)Ribosomal L29 protein- Family
AB [auth Ba]PF00327Ribosomal protein L30p/L7e (Ribosomal_L30)Ribosomal protein L30p/L7eThis family includes prokaryotic L30 and eukaryotic L7.Domain
BB [auth Bb]PF01248Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae)Ribosomal protein L7Ae/L30e/S12e/Gadd45 familyThis family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ...This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118 [1].
Domain
CB [auth Bc]PF01198Ribosomal protein L31e (Ribosomal_L31e)Ribosomal protein L31e- Family
DB [auth Bd]PF01655Ribosomal protein L32 (Ribosomal_L32e)Ribosomal protein L32- Family
EB [auth Be]PF01199Ribosomal protein L34e (Ribosomal_L34e)Ribosomal protein L34e- Family
FB [auth Bg]PF01780Ribosomal L37ae protein family (Ribosomal_L37ae)Ribosomal L37ae protein family- Family
GB [auth Bh]PF01907Ribosomal protein L37e (Ribosomal_L37e)Ribosomal protein L37e- Family
HB [auth Bi]PF00832Ribosomal L39 protein (Ribosomal_L39)Ribosomal L39 protein- Family
KB [auth Bl]PF00935Ribosomal protein L44 (Ribosomal_L44)Ribosomal protein L44- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth Aa]16S ribosomal RNA---
B [auth Ab]30S ribosomal protein S2
C [auth Ac]30S ribosomal protein S3
D [auth Ad]30S ribosomal protein S3Ae
E [auth Ae]30S ribosomal protein S4
F [auth Af]30S ribosomal protein S4e
G [auth Ag]30S ribosomal protein S5
H [auth Ah]30S ribosomal protein S6e
I [auth Ai]30S ribosomal protein S7
J [auth Aj]30S ribosomal protein S8
K [auth Ak]30S ribosomal protein S8e
L [auth Al]30S ribosomal protein S9
M [auth Am]30S ribosomal protein S10
N [auth An]30S ribosomal protein S11
O [auth Ao]30S ribosomal protein S12
P [auth Ap]30S ribosomal protein S13
Q [auth Aq]30S ribosomal protein S15
R [auth Ar]30S ribosomal protein S14 type Z
S [auth As]30S ribosomal protein S17
T [auth At]30S ribosomal protein S17e
U [auth Au]30S ribosomal protein S19
V [auth Av]30S ribosomal protein S19e
W [auth Aw]30S ribosomal protein S24e
X [auth Ax]30S ribosomal protein S27e
Y [auth Ay]30S ribosomal protein S28e
Z [auth Az]Predicted zinc-ribbon RNA-binding protein involved in translation- - -
AA [auth BA]23S ribosomal RNA---
BA [auth BB]5S ribosomal RNA---
CA [auth BC]50S ribosomal protein L2
DA [auth BD]50S ribosomal protein L3
EA [auth BE]50S ribosomal protein L4
FA [auth BF]50S ribosomal protein L5
GA [auth BG]50S ribosomal protein L6
HA [auth BH],
IA [auth BI]
50S ribosomal protein L7Ae
JA [auth BJ]50S ribosomal protein L10e
KA [auth BK]50S ribosomal protein L13
LA [auth BL]50S ribosomal protein L14
MA [auth BM],
NA [auth BN]
50S ribosomal protein L14e
OA [auth BO]50S ribosomal protein L15
PA [auth BP]50S ribosomal protein L15e
QA [auth BQ]50S ribosomal protein L18
RA [auth BR]50S ribosomal protein L18e
SA [auth BS]50S ribosomal protein L19e
TA [auth BT]50S ribosomal protein L18Ae
UA [auth BU]50S ribosomal protein L21e
VA [auth BV]50S ribosomal protein L22
WA [auth BW]50S ribosomal protein L23
XA [auth BX]50S ribosomal protein L24
YA [auth BY]50S ribosomal protein L24e
ZA [auth BZ]50S ribosomal protein L29
AB [auth Ba]50S ribosomal protein L30
BB [auth Bb]50S ribosomal protein L30e
CB [auth Bc]50S ribosomal protein L31e
DB [auth Bd]50S ribosomal protein L32e
EB [auth Be]50S ribosomal protein L34e
FB [auth Bg]50S ribosomal protein L37Ae
GB [auth Bh]50S ribosomal protein L37e
HB [auth Bi]50S ribosomal protein L39e
IB [auth Bj]50S ribosomal protein L40e
JB [auth Bk]LSU ribosomal protein L41E- -
KB [auth Bl]50S ribosomal protein L44e

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
B [auth Ab]IPR005707Small ribosomal subunit protein uS2, eukaryotic/archaealFamily
B [auth Ab]IPR023591Small ribosomal subunit protein uS2, flavodoxin-like domain superfamilyHomologous Superfamily
B [auth Ab]IPR018130Small ribosomal subunit protein uS2, conserved siteConserved Site
B [auth Ab]IPR001865Small ribosomal subunit protein uS2Family
B [auth Ab]IPR023454Small ribosomal subunit protein uS2, archaealFamily
C [auth Ac]IPR004087K Homology domainDomain
C [auth Ac]IPR004044K Homology domain, type 2Domain
C [auth Ac]IPR015946K homology domain-like, alpha/betaHomologous Superfamily
C [auth Ac]IPR036419Ribosomal protein S3, C-terminal domain superfamilyHomologous Superfamily
C [auth Ac]IPR027488Small ribosomal subunit protein uS3, archaealFamily
C [auth Ac]IPR001351Small ribosomal subunit protein uS3, C-terminalDomain
C [auth Ac]IPR005703Small ribosomal subunit protein uS3, eukaryotic/archaealFamily
C [auth Ac]IPR009019K homology domain superfamily, prokaryotic typeHomologous Superfamily
D [auth Ad]IPR001593Small ribosomal subunit protein eS1Family
D [auth Ad]IPR018281Small ribosomal subunit protein eS1, conserved siteConserved Site
D [auth Ad]IPR030838Small ribosomal subunit protein eS1, archaealFamily
E [auth Ae]IPR018079Small ribosomal subunit protein uS4, conserved siteConserved Site
E [auth Ae]IPR002942RNA-binding S4 domainDomain
E [auth Ae]IPR001912Small ribosomal subunit protein uS4, N-terminalDomain
E [auth Ae]IPR005710Small ribosomal subunit protein uS4, eukaryotic/archaealFamily
E [auth Ae]IPR036986RNA-binding S4 domain superfamilyHomologous Superfamily
E [auth Ae]IPR022801Small ribosomal subunit protein uS4Family
E [auth Ae]IPR022802Small ribosomal subunit protein uS4, archaealFamily
F [auth Af]IPR018199Small ribosomal subunit protein eS4, N-terminal, conserved siteConserved Site
F [auth Af]IPR013843Small ribosomal subunit protein eS4, N-terminalDomain
F [auth Af]IPR002942RNA-binding S4 domainDomain
F [auth Af]IPR013845Small ribosomal subunit protein eS4, central regionDomain
F [auth Af]IPR000876Small ribosomal subunit protein eS4Family
F [auth Af]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
F [auth Af]IPR038237Small ribosomal subunit protein eS4, central domain superfamilyHomologous Superfamily
F [auth Af]IPR041982Small ribosomal subunit protein eS4, KOW domainDomain
F [auth Af]IPR036986RNA-binding S4 domain superfamilyHomologous Superfamily
G [auth Ag]IPR000851Small ribosomal subunit protein uS5Family
G [auth Ag]IPR005711Small ribosomal subunit protein uS5, eukaryotic/archaealFamily
G [auth Ag]IPR047866Small ribosomal subunit protein uS5, archaeaFamily
G [auth Ag]IPR005324Small ribosomal subunit protein uS5, C-terminalDomain
G [auth Ag]IPR013810Small ribosomal subunit protein uS5, N-terminalDomain
G [auth Ag]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
G [auth Ag]IPR018192Small ribosomal subunit protein uS5, N-terminal, conserved siteConserved Site
G [auth Ag]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
H [auth Ah]IPR001377Small ribosomal subunit protein eS6Family
H [auth Ah]IPR018282Small ribosomal subunit protein eS6, conserved siteConserved Site
H [auth Ah]IPR020924Small ribosomal subunit protein eS6, archaealFamily
I [auth Ai]IPR000235Small ribosomal subunit protein uS7Family
I [auth Ai]IPR036823Small ribosomal subunit protein uS7 domain superfamilyHomologous Superfamily
I [auth Ai]IPR026018Small ribosomal subunit protein uS7, archaealFamily
I [auth Ai]IPR023798Small ribosomal subunit protein uS7 domainDomain
I [auth Ai]IPR005716Ribosomal protein uS7, eukaryotic/archaealFamily
J [auth Aj]IPR000630Small ribosomal subunit protein uS8Family
J [auth Aj]IPR047863Small ribosomal subunit protein uS8, conserved siteConserved Site
J [auth Aj]IPR035987Small ribosomal subunit protein uS8 superfamilyHomologous Superfamily
K [auth Ak]IPR001047Small ribosomal subunit protein eS8Family
K [auth Ak]IPR020919Small ribosomal subunit protein eS8, archaealFamily
K [auth Ak]IPR022309Ribosomal protein eS8/ribosomal biogenesis NSA2Family
K [auth Ak]IPR018283Small ribosomal subunit protein eS8, conserved siteConserved Site
L [auth Al]IPR020574Small ribosomal subunit protein uS9, conserved siteConserved Site
L [auth Al]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
L [auth Al]IPR019958Small ribosomal subunit protein uS9, archaealFamily
L [auth Al]IPR000754Small ribosomal subunit protein uS9Family
L [auth Al]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
M [auth Am]IPR001848Small ribosomal subunit protein uS10Family
M [auth Am]IPR027486Small ribosomal subunit protein uS10 domainDomain
M [auth Am]IPR036838Small ribosomal subunit protein uS10 domain superfamilyHomologous Superfamily
M [auth Am]IPR005729Small ribosomal subunit protein uS10, eukaryotic/archaealFamily
M [auth Am]IPR018268Small ribosomal subunit protein uS10, conserved siteConserved Site
N [auth An]IPR019961Small ribosomal subunit protein uS11, archaealFamily
N [auth An]IPR001971Small ribosomal subunit protein uS11Family
N [auth An]IPR036967Small ribosomal subunit protein uS11 superfamilyHomologous Superfamily
N [auth An]IPR018102Small ribosomal subunit protein uS11, conserved siteConserved Site
O [auth Ao]IPR006032Small ribosomal subunit protein uS12Family
O [auth Ao]IPR022863Ribosomal protein uS12, archaeaFamily
O [auth Ao]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
O [auth Ao]IPR005679Ribosomal protein uS12, bacterial-typeFamily
O [auth Ao]IPR005680Small ribosomal subunit protein uS12, eukaryotic/archaealFamily
P [auth Ap]IPR019977Small ribosomal subunit protein uS13, archaealFamily
P [auth Ap]IPR027437Small ribosomal subunit protein uS13, C-terminalHomologous Superfamily
P [auth Ap]IPR001892Small ribosomal subunit protein uS13Family
P [auth Ap]IPR018269Small ribosomal subunit protein uS13, conserved siteConserved Site
P [auth Ap]IPR010979Small ribosomal subunit protein uS13-like, H2THHomologous Superfamily
Q [auth Aq]IPR012606Small ribosomal subunit protein uS15, N-terminalDomain
Q [auth Aq]IPR009068uS15/NS1, RNA-binding domain superfamilyHomologous Superfamily
Q [auth Aq]IPR023029Small ribosomal subunit protein uS15, archaea/eukaryotesFamily
Q [auth Aq]IPR000589Small ribosomal subunit protein uS15Family
R [auth Ar]IPR001209Small ribosomal subunit protein uS14Family
R [auth Ar]IPR018271Small ribosomal subunit protein uS14, conserved siteConserved Site
R [auth Ar]IPR039744Small ribosomal subunit protein uS14, eukaryotes/archaeaFamily
R [auth Ar]IPR043140Small ribosomal subunit protein uS14 superfamilyHomologous Superfamily
R [auth Ar]IPR023676Small ribosomal subunit protein uS14, archaeaFamily
S [auth As]IPR019979Small ribosomal subunit protein uS17, conserved siteConserved Site
S [auth As]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
S [auth As]IPR000266Small ribosomal subunit protein uS17Family
S [auth As]IPR019978Small ribosomal subunit protein uS17, archaealFamily
S [auth As]IPR028333Small ribosomal subunit protein uS17, archaeal/eukaryoticFamily
T [auth At]IPR036401Small ribosomal subunit protein eS17 superfamilyHomologous Superfamily
T [auth At]IPR001210Small ribosomal subunit protein eS17Family
T [auth At]IPR018273Small ribosomal subunit protein eS17, conserved siteConserved Site
U [auth Au]IPR002222Small ribosomal subunit protein uS19Family
U [auth Au]IPR005732Small ribosomal subunit protein uS19, bacterial-typeFamily
U [auth Au]IPR023575Small ribosomal subunit protein uS19, superfamilyHomologous Superfamily
U [auth Au]IPR020934Small ribosomal subunit protein uS19, conserved siteConserved Site
U [auth Au]IPR005713Small ribosomal subunit protein uS19, eukaryotic/archaealFamily
V [auth Av]IPR027548Small ribosomal subunit protein eS19, archaealFamily
V [auth Av]IPR001266Small ribosomal subunit protein eS19Family
V [auth Av]IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
V [auth Av]IPR018277Small ribosomal subunit protein eS19, conserved siteConserved Site
V [auth Av]IPR036390Winged helix DNA-binding domain superfamilyHomologous Superfamily
W [auth Aw]IPR001976Small ribosomal subunit protein eS24Family
W [auth Aw]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
W [auth Aw]IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
W [auth Aw]IPR018098Small ribosomal subunit protein eS24 conserved siteConserved Site
X [auth Ax]IPR023407Small ribosomal subunit protein eS27, zinc-binding domain superfamilyHomologous Superfamily
X [auth Ax]IPR000592Small ribosomal subunit protein eS27Family
X [auth Ax]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
Y [auth Ay]IPR028626Ribosomal protein eS28 conserved siteConserved Site
Y [auth Ay]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
Y [auth Ay]IPR000289Small ribosomal subunit protein eS28Family
Z [auth Az]IPR011668Small zinc finger protein HVO_2753-like, zinc-binding pocketDomain
Z [auth Az]IPR044720Zinc finger protein HVO_2753-likeFamily
CA [auth BC]IPR022669Large ribosomal subunit protein uL2, C-terminalDomain
CA [auth BC]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
CA [auth BC]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
CA [auth BC]IPR023672Large ribosomal subunit protein uL2, archaeal-typeFamily
CA [auth BC]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
CA [auth BC]IPR022666Large ribosomal subunit protein uL2, RNA-binding domainDomain
CA [auth BC]IPR014726Large ribosomal subunit protein uL2, domain 3Homologous Superfamily
CA [auth BC]IPR002171Large ribosomal subunit protein uL2Family
DA [auth BD]IPR019926Large ribosomal subunit protein uL3, conserved siteConserved Site
DA [auth BD]IPR019928Large ribosomal subunit protein uL3, archaealFamily
DA [auth BD]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
DA [auth BD]IPR045077Large ribosomal subunit protein uL3, archaeal/eukaryotic-typeFamily
DA [auth BD]IPR044892Ribosomal protein L3, domain 3, archaeal-type superfamilyHomologous Superfamily
DA [auth BD]IPR000597Large ribosomal subunit protein uL3Family
EA [auth BE]IPR019970Large ribosomal subunit protein uL4, archaeaFamily
EA [auth BE]IPR002136Large ribosomal subunit protein uL4Family
EA [auth BE]IPR013000Large ribosomal subunit protein uL4, eukaryotic/archaeal, conserved siteConserved Site
EA [auth BE]IPR045240Large ribosomal subunit protein uL4, eukaryotic and archaeal typeFamily
EA [auth BE]IPR023574Large ribosomal subunit protein uL4 domain superfamilyHomologous Superfamily
FA [auth BF]IPR022803Large ribosomal subunit protein uL5 domain superfamilyHomologous Superfamily
FA [auth BF]IPR022804Large ribosomal subunit protein uL5, archaealFamily
FA [auth BF]IPR031309Large ribosomal subunit protein uL5, C-terminalDomain
FA [auth BF]IPR031310Large ribosomal subunit protein uL5, N-terminalDomain
FA [auth BF]IPR002132Large ribosomal subunit protein uL5Family
GA [auth BG]IPR020040Large ribosomal subunit protein uL6, alpha-beta domainDomain
GA [auth BG]IPR019907Large ribosomal subunit protein uL6, archaeaFamily
GA [auth BG]IPR002359Large ribosomal subunit protein uL6, conserved site-2Conserved Site
GA [auth BG]IPR036789Large ribosomal subunit protein uL6-like, alpha-beta domain superfamilyHomologous Superfamily
GA [auth BG]IPR000702Large ribosomal subunit protein uL6-likeFamily
HA [auth BH],
IA [auth BI]
IPR004038Ribosomal protein eL8/eL30/eS12/Gadd45Domain
HA [auth BH],
IA [auth BI]
IPR022481Large ribosomal subunit protein eL8, archaeaFamily
HA [auth BH],
IA [auth BI]
IPR004037Large ribosomal subunit protein eL8-like, conserved siteConserved Site
HA [auth BH],
IA [auth BI]
IPR029064Ribosomal protein eL30-like superfamilyHomologous Superfamily
HA [auth BH],
IA [auth BI]
IPR018492Ribosomal protein eL8/Nhp2 familyFamily
JA [auth BJ]IPR036920Large ribosomal subunit protein uL16 superfamilyHomologous Superfamily
JA [auth BJ]IPR022981Large ribosomal subunit protein uL16, archaeaFamily
JA [auth BJ]IPR001197Large ribosomal subunit protein uL16, eukaryotes/archaeaFamily
JA [auth BJ]IPR016180Large ribosomal subunit protein uL16 domainDomain
JA [auth BJ]IPR047873Large ribosomal subunit protein uL16Family
JA [auth BJ]IPR018255Large ribosomal subunit protein uL16, conserved site, eukaryotes/archaeaConserved Site
KA [auth BK]IPR023563Large ribosomal subunit protein uL13, conserved siteConserved Site
KA [auth BK]IPR005822Large ribosomal subunit protein uL13Family
KA [auth BK]IPR036899Large ribosomal subunit protein uL13 superfamilyHomologous Superfamily
KA [auth BK]IPR005755Large ribosomal subunit protein uL13, eukaryotic/archaealFamily
LA [auth BL]IPR019971Large ribosomal subunit protein uL14, archaealFamily
LA [auth BL]IPR036853Large ribosomal subunit protein uL14 superfamilyHomologous Superfamily
LA [auth BL]IPR000218Large ribosomal subunit protein uL14Family
MA [auth BM],
NA [auth BN]
IPR023651Large ribosomal subunit protein eL14, archaealFamily
MA [auth BM],
NA [auth BN]
IPR039660Large ribosomal subunit protein eL14Family
MA [auth BM],
NA [auth BN]
IPR041985Large ribosomal subunit protein eL14, KOW motifDomain
MA [auth BM],
NA [auth BN]
IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
MA [auth BM],
NA [auth BN]
IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
OA [auth BO]IPR027386Ribosomal uL15, N-terminalHomologous Superfamily
OA [auth BO]IPR021131Large ribosomal subunit protein uL15/eL18Domain
OA [auth BO]IPR030878Large ribosomal subunit protein uL15Family
OA [auth BO]IPR001196Large ribosomal subunit protein uL15, conserved siteConserved Site
OA [auth BO]IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
PA [auth BP]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
PA [auth BP]IPR020925Large ribosomal subunit protein eL15, conserved siteConserved Site
PA [auth BP]IPR024794Large ribosomal subunit protein eL15 core domain superfamilyHomologous Superfamily
PA [auth BP]IPR020926Large ribosomal subunit protein eL15, archaealFamily
PA [auth BP]IPR000439Large ribosomal subunit protein eL15Family
QA [auth BQ]IPR005485Large ribosomal subunit protein uL18 eukaryotic/archaealFamily
RA [auth BR]IPR022947Large ribosomal subunit protein eL18, archaeaFamily
RA [auth BR]IPR021131Large ribosomal subunit protein uL15/eL18Domain
RA [auth BR]IPR021132Large ribosomal subunit protein eL18, conserved siteConserved Site
RA [auth BR]IPR000039Large ribosomal subunit protein eL18Family
RA [auth BR]IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
SA [auth BS]IPR015972Large ribosomal subunit protein eL19, domain 1Homologous Superfamily
SA [auth BS]IPR039547Large ribosomal subunit protein eL19Family
SA [auth BS]IPR023638Large ribosomal subunit protein eL19, conserved siteConserved Site
SA [auth BS]IPR035970Large ribosomal subunit protein eL19 superfamilyHomologous Superfamily
SA [auth BS]IPR000196Large ribosomal subunit protein eL19 domainDomain
TA [auth BT]IPR028877Large ribosomal subunit protein eL20Family
TA [auth BT]IPR023573Large ribosomal subunit protein eL20 domainDomain
UA [auth BU]IPR022856Large ribosomal subunit protein eL21, archaealFamily
UA [auth BU]IPR018259Large ribosomal subunit protein eL21, conserved siteConserved Site
UA [auth BU]IPR036948Large ribosomal subunit protein eL21 superfamilyHomologous Superfamily
UA [auth BU]IPR001147Large ribosomal subunit protein eL21Family
UA [auth BU]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
VA [auth BV]IPR018260Large ribosomal subunit protein uL22, conserved siteConserved Site
VA [auth BV]IPR036394Ribosomal protein uL22 superfamilyHomologous Superfamily
VA [auth BV]IPR001063Large ribosomal subunit protein uL22Family
VA [auth BV]IPR005721Large ribosomal subunit protein uL22, eukaryotic/archaealFamily
WA [auth BW]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
WA [auth BW]IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
WA [auth BW]IPR019985Large ribosomal subunit protein uL23Family
WA [auth BW]IPR001014Large ribosomal subunit protein uL23, conserved siteConserved Site
WA [auth BW]IPR013025Large ribosomal subunit protein uL23-likeFamily
XA [auth BX]IPR041988Large ribosomal subunit protein uL24, KOW domainDomain
XA [auth BX]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
XA [auth BX]IPR005824KOWDomain
XA [auth BX]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
XA [auth BX]IPR005756Large ribosomal subunit protein uL24, eukaryotic/archaealFamily
XA [auth BX]IPR005825Large ribosomal subunit protein uL24, conserved siteConserved Site
YA [auth BY]IPR023438Large ribosomal subunit protein eL24Family
YA [auth BY]IPR011017TRASH domainDomain
YA [auth BY]IPR000988Large ribosomal subunit protein eL24-relatedFamily
YA [auth BY]IPR023442Large ribosomal subunit protein eL24, conserved siteConserved Site
YA [auth BY]IPR038630Ribosomal protein L24e/L24 superfamilyHomologous Superfamily
ZA [auth BZ]IPR001854Large ribosomal subunit protein uL29Family
ZA [auth BZ]IPR036049Large ribosomal subunit protein uL29 superfamilyHomologous Superfamily
ZA [auth BZ]IPR018254Large ribosomal subunit protein uL29, conserved siteConserved Site
AB [auth Ba]IPR035808Large ribosomal subunit protein uL30, eukaryotic/archaealDomain
AB [auth Ba]IPR036919Large ribosomal subunit protein uL30, ferredoxin-like fold domain superfamilyHomologous Superfamily
AB [auth Ba]IPR039699Large ribosomal subunit protein uL30Family
AB [auth Ba]IPR016082Large ribosomal subunit protein uL30-like, ferredoxin-like fold domainDomain
AB [auth Ba]IPR018038Large ribosomal subunit protein uL30, conserved siteConserved Site
AB [auth Ba]IPR005997Large ribosomal subunit protein uL30, archaealFamily
BB [auth Bb]IPR022991Large ribosomal subunit protein eL30, conserved siteConserved Site
BB [auth Bb]IPR004038Ribosomal protein eL8/eL30/eS12/Gadd45Domain
BB [auth Bb]IPR000231Large ribosomal subunit protein eL30Family
BB [auth Bb]IPR039109Large ribosomal subunit protein eL30-likeFamily
BB [auth Bb]IPR029064Ribosomal protein eL30-like superfamilyHomologous Superfamily
CB [auth Bc]IPR020052Large ribosomal subunit protein eL31, conserved siteConserved Site
CB [auth Bc]IPR023621Large ribosomal subunit protein eL31 domain superfamilyHomologous Superfamily
CB [auth Bc]IPR000054Large ribosomal subunit protein eL31Family
DB [auth Bd]IPR036351Large ribosomal subunit protein eL32 superfamilyHomologous Superfamily
DB [auth Bd]IPR023654Large ribosomal subunit protein eL32, archaealFamily
DB [auth Bd]IPR001515Large ribosomal subunit protein eL32Family
DB [auth Bd]IPR018263Large ribosomal subunit protein eL32, conserved siteConserved Site
EB [auth Be]IPR008195Large ribosomal subunit protein eL34Family
EB [auth Be]IPR047868Large ribosomal subunit protein eL34, archaeal-typeFamily
EB [auth Be]IPR018065Large ribosomal subunit protein eL34, conserved siteConserved Site
FB [auth Bg]IPR002674Large ribosomal subunit protein eL43Family
FB [auth Bg]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
FB [auth Bg]IPR011331Large ribosomal subunit protein eL37/eL43Homologous Superfamily
GB [auth Bh]IPR001569Large ribosomal subunit protein eL37Family
GB [auth Bh]IPR018267Large ribosomal subunit protein eL37, conserved siteConserved Site
GB [auth Bh]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
GB [auth Bh]IPR011331Large ribosomal subunit protein eL37/eL43Homologous Superfamily
HB [auth Bi]IPR023626Large ribosomal subunit protein eL39 domain superfamilyHomologous Superfamily
HB [auth Bi]IPR000077Large ribosomal subunit protein eL39Family
HB [auth Bi]IPR020083Large ribosomal subunit protein eL39, conserved siteConserved Site
IB [auth Bj]IPR001975Large ribosomal subunit protein eL40 domainDomain
IB [auth Bj]IPR023657Large ribosomal subunit protein eL40, archaealFamily
IB [auth Bj]IPR038587Large ribosomal subunit protein eL40 superfamilyHomologous Superfamily
IB [auth Bj]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
KB [auth Bl]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
KB [auth Bl]IPR000552Large ribosomal subunit protein eL42Family