6TH6
Cryo-EM Structure of T. kodakarensis 70S ribosome
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
B [auth Ab] | SCOP2B Superfamily | SIS domain/Ribosomal protein S2-like | 8099654 | 3001397 | SCOP2B (2022-06-29) |
D [auth Ad] | SCOP2 Family | Ribosomal S3Ae | 8099631 | 4006095 | SCOP2 (2022-06-29) |
D [auth Ad] | SCOP2 Superfamily | Ribosomal S3Ae-like | 8099632 | 3002166 | SCOP2 (2022-06-29) |
H [auth Ah] | SCOP2 Family | Ribosomal protein S6e | 8099615 | 4006143 | SCOP2 (2022-06-29) |
H [auth Ah] | SCOP2 Superfamily | GS N-terminal domain-like | 8099616 | 3000408 | SCOP2 (2022-06-29) |
I [auth Ai] | SCOP2B Superfamily | Ribosomal protein S7 | 8099620 | 3000799 | SCOP2B (2022-06-29) |
J [auth Aj] | SCOP2B Superfamily | Ribosomal protein S8 | 8099678 | 3000709 | SCOP2B (2022-06-29) |
K [auth Ak] | SCOP2 Family | Ribosomal protein S8e | 8099629 | 4006189 | SCOP2 (2022-06-29) |
K [auth Ak] | SCOP2 Superfamily | 50S Ribosomal protein L14-like | 8099630 | 3000433 | SCOP2 (2022-06-29) |
L [auth Al] | SCOP2 Family | Translational machinery components | 8099655 | 4000951 | SCOP2 (2022-06-29) |
L [auth Al] | SCOP2 Superfamily | Ribosomal protein S5 domain 2-like | 8099656 | 3000100 | SCOP2 (2022-06-29) |
M [auth Am] | SCOP2 Family | Ribosomal protein S10 | 8099627 | 4001240 | SCOP2 (2022-06-29) |
M [auth Am] | SCOP2 Superfamily | Ribosomal protein S10 | 8099628 | 3001336 | SCOP2 (2022-06-29) |
N [auth An] | SCOP2 Family | Ribosomal protein L18p and S11 | 8099661 | 4000555 | SCOP2 (2022-06-29) |
N [auth An] | SCOP2 Superfamily | Translational machinery components | 8099662 | 3000571 | SCOP2 (2022-06-29) |
P [auth Ap] | SCOP2 Family | Ribosomal protein S13 | 8099659 | 4000260 | SCOP2 (2022-06-29) |
P [auth Ap] | SCOP2 Superfamily | S13-like H2TH domain | 8099660 | 3000053 | SCOP2 (2022-06-29) |
R [auth Ar] | SCOP2 Family | Ribosomal protein S14p/S29e | 8099675 | 4003647 | SCOP2 (2022-06-29) |
R [auth Ar] | SCOP2 Superfamily | Glucocorticoid receptor-like (DNA-binding domain) | 8099676 | 3000068 | SCOP2 (2022-06-29) |
T [auth At] | SCOP2 Family | Rps17e-like | 8099601 | 4002889 | SCOP2 (2022-06-29) |
T [auth At] | SCOP2 Superfamily | Rps17e-like | 8099602 | 3001852 | SCOP2 (2022-06-29) |
V [auth Av] | SCOP2 Family | Rps19E-like | 8099633 | 4000222 | SCOP2 (2022-06-29) |
V [auth Av] | SCOP2 Superfamily | Winged helix DNA-binding domain | 8099634 | 3000034 | SCOP2 (2022-06-29) |
W [auth Aw] | SCOP2 Family | Ribosomal protein S24e | 8099651 | 4003636 | SCOP2 (2022-06-29) |
W [auth Aw] | SCOP2 Superfamily | Ribosomal proteins S24e L23 and L15e | 8099652 | 3000210 | SCOP2 (2022-06-29) |
X [auth Ax] | SCOP2 Family | Ribosomal protein S27e | 8099623 | 4003887 | SCOP2 (2022-06-29) |
X [auth Ax] | SCOP2 Superfamily | Zn-binding ribosomal proteins | 8099624 | 3001320 | SCOP2 (2022-06-29) |
Y [auth Ay] | SCOP2 Family | Cold shock DNA-binding domain-like | 8099637 | 4001909 | SCOP2 (2022-06-29) |
Y [auth Ay] | SCOP2 Superfamily | Nucleic acid-binding proteins | 8099638 | 3000135 | SCOP2 (2022-06-29) |
DA [auth BD] | SCOP2 Family | Ribosomal protein L3 | 8099613 | 4002103 | SCOP2 (2022-06-29) |
DA [auth BD] | SCOP2 Superfamily | Translational proteins | 8099614 | 3000811 | SCOP2 (2022-06-29) |
EA [auth BE] | SCOP2 Family | Ribosomal protein L4 | 8099609 | 4003628 | SCOP2 (2022-06-29) |
EA [auth BE] | SCOP2 Superfamily | Ribosomal protein L4 | 8099610 | 3001146 | SCOP2 (2022-06-29) |
FA [auth BF] | SCOP2B Superfamily | RL5-like | 8099674 | 3001709 | SCOP2B (2022-06-29) |
HA [auth BH] | SCOP2B Superfamily | L30e-like | 8099636 | 3001739 | SCOP2B (2022-06-29) |
IA [auth BI] | SCOP2 Family | L30e/L7ae ribosomal proteins | 8099635 | 4001513 | SCOP2 (2022-06-29) |
IA [auth BI] | SCOP2 Superfamily | L30e-like | 8099636 | 3001739 | SCOP2 (2022-06-29) |
JA [auth BJ] | SCOP2B Superfamily | Ribosomal protein L16p/L10e | 8099612 | 3000884 | SCOP2B (2022-06-29) |
KA [auth BK] | SCOP2 Family | Ribosomal protein L13 | 8099665 | 4003623 | SCOP2 (2022-06-29) |
KA [auth BK] | SCOP2 Superfamily | Ribosomal protein L13 | 8099666 | 3001134 | SCOP2 (2022-06-29) |
LA [auth BL] | SCOP2 Family | Ribosomal protein L14 | 8099669 | 4001826 | SCOP2 (2022-06-29) |
LA [auth BL] | SCOP2 Superfamily | 50S Ribosomal protein L14-like | 8099670 | 3000433 | SCOP2 (2022-06-29) |
MA [auth BM] | SCOP2B Superfamily | Translation proteins SH3-like KOW motif containing domain | 8099658 | 3000334 | SCOP2B (2022-06-29) |
NA [auth BN] | SCOP2B Superfamily | Translation proteins SH3-like KOW motif containing domain | 8099658 | 3000334 | SCOP2B (2022-06-29) |
OA [auth BO] | SCOP2 Family | Ribosomal proteins L15p and L18e | 8099687 | 4003555 | SCOP2 (2022-06-29) |
OA [auth BO] | SCOP2 Superfamily | Ribosomal proteins L15p and L18e | 8099688 | 3001045 | SCOP2 (2022-06-29) |
PA [auth BP] | SCOP2 Family | L15e | 8099645 | 4000945 | SCOP2 (2022-06-29) |
PA [auth BP] | SCOP2 Superfamily | Ribosomal proteins S24e L23 and L15e | 8099646 | 3000210 | SCOP2 (2022-06-29) |
QA [auth BQ] | SCOP2B Superfamily | Translational machinery components | 8099684 | 3000571 | SCOP2B (2022-06-29) |
RA [auth BR] | SCOP2 Family | Ribosomal proteins L15p and L18e | 8099663 | 4003555 | SCOP2 (2022-06-29) |
RA [auth BR] | SCOP2 Superfamily | Ribosomal proteins L15p and L18e | 8099664 | 3001045 | SCOP2 (2022-06-29) |
SA [auth BS] | SCOP2 Family | Ribosomal protein L19 (L19e) | 8099681 | 4001138 | SCOP2 (2022-06-29) |
SA [auth BS] | SCOP2 Superfamily | Ribosomal protein L19 (L19e) | 8099682 | 3000890 | SCOP2 (2022-06-29) |
TA [auth BT] | SCOP2 Family | RplX-like | 8099639 | 4002003 | SCOP2 (2022-06-29) |
TA [auth BT] | SCOP2 Superfamily | RplX-like | 8099640 | 3000673 | SCOP2 (2022-06-29) |
UA [auth BU] | SCOP2B Superfamily | Translation proteins SH3-like KOW motif containing domain | 8099648 | 3000334 | SCOP2B (2022-06-29) |
VA [auth BV] | SCOP2 Family | Ribosomal protein L22 | 8099605 | 4001212 | SCOP2 (2022-06-29) |
VA [auth BV] | SCOP2 Superfamily | Ribosomal protein L22 | 8099606 | 3001078 | SCOP2 (2022-06-29) |
WA [auth BW] | SCOP2 Family | L23p | 8099603 | 4000943 | SCOP2 (2022-06-29) |
WA [auth BW] | SCOP2 Superfamily | Ribosomal proteins S24e L23 and L15e | 8099604 | 3000210 | SCOP2 (2022-06-29) |
XA [auth BX] | SCOP2 Family | Ribosomal proteins L24p and L21e | 8099671 | 4001752 | SCOP2 (2022-06-29) |
XA [auth BX] | SCOP2 Superfamily | Translation proteins SH3-like KOW motif containing domain | 8099672 | 3000334 | SCOP2 (2022-06-29) |
ZA [auth BZ] | SCOP2 Family | Ribosomal protein L29 (L29p) | 8099607 | 4000600 | SCOP2 (2022-06-29) |
ZA [auth BZ] | SCOP2 Superfamily | Ribosomal protein L29 (L29p) | 8099608 | 3000713 | SCOP2 (2022-06-29) |
AB [auth Ba] | SCOP2B Superfamily | Ribosomal protein L30p/L7e | 8099686 | 3001378 | SCOP2B (2022-06-29) |
BB [auth Bb] | SCOP2 Family | L30e/L7ae ribosomal proteins | 8099621 | 4001513 | SCOP2 (2022-06-29) |
BB [auth Bb] | SCOP2 Superfamily | L30e-like | 8099622 | 3001739 | SCOP2 (2022-06-29) |
CB [auth Bc] | SCOP2 Family | Ribosomal protein L31e | 8099641 | 4001085 | SCOP2 (2022-06-29) |
CB [auth Bc] | SCOP2 Superfamily | Ribosomal protein L31e | 8099642 | 3000699 | SCOP2 (2022-06-29) |
DB [auth Bd] | SCOP2 Family | Ribosomal protein L32e | 8099679 | 4003517 | SCOP2 (2022-06-29) |
DB [auth Bd] | SCOP2 Superfamily | Ribosomal protein L32e | 8099680 | 3000982 | SCOP2 (2022-06-29) |
EB [auth Be] | SCOP2 Family | Ribosomal protein L34e-like | 8099667 | 4006193 | SCOP2 (2022-06-29) |
EB [auth Be] | SCOP2 Superfamily | Ribosomal protein L34e-like | 8099668 | 3002203 | SCOP2 (2022-06-29) |
FB [auth Bg] | SCOP2 Family | Ribosomal protein L37ae | 8099617 | 4003704 | SCOP2 (2022-06-29) |
FB [auth Bg] | SCOP2 Superfamily | Zn-binding ribosomal proteins | 8099618 | 3001320 | SCOP2 (2022-06-29) |
GB [auth Bh] | SCOP2 Family | Ribosomal protein L37e | 8099649 | 4003706 | SCOP2 (2022-06-29) |
GB [auth Bh] | SCOP2 Superfamily | Zn-binding ribosomal proteins | 8099650 | 3001320 | SCOP2 (2022-06-29) |
HB [auth Bi] | SCOP2 Family | ribosomal protein l39e | 8099643 | 4001518 | SCOP2 (2022-06-29) |
HB [auth Bi] | SCOP2 Superfamily | Ribosomal protein L39e | 8099644 | 3001756 | SCOP2 (2022-06-29) |
KB [auth Bl] | SCOP2 Family | Ribosomal protein L44e | 8099625 | 4003711 | SCOP2 (2022-06-29) |
KB [auth Bl] | SCOP2 Superfamily | Zn-binding ribosomal proteins | 8099626 | 3001320 | SCOP2 (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
B [auth Ab] | Ribosomal_S2_2 | e6th6Ab1 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Ribosomal protein S2/SIS domain (From Topology) | T: Ribosomal protein S2/SIS domain | F: Ribosomal_S2_2 | ECOD (1.6) |
C [auth Ac] | Ribosomal_S3_C | e6th6Ac1 | A: a+b two layers | X: T-fold | H: Ribosomal protein S3-C (From Topology) | T: Ribosomal protein S3-C | F: Ribosomal_S3_C | ECOD (1.6) |
C [auth Ac] | KH_2_2 | e6th6Ac2 | A: a+b two layers | X: Alpha-lytic protease prodomain-like | H: KH-domains | T: Prokaryotic type KH domain (KH-domain type II) | F: KH_2_2 | ECOD (1.6) |
D [auth Ad] | Ribosomal_S3Ae_N | e6th6Ad1 | A: beta barrels | X: Ribosomal protein L25-like | H: 40S ribosomal protein S3A N-terminal domain (From Topology) | T: 40S ribosomal protein S3A N-terminal domain | F: Ribosomal_S3Ae_N | ECOD (1.6) |
D [auth Ad] | Ribosomal_S3Ae_C | e6th6Ad2 | A: a+b two layers | X: T-fold | H: 40S ribosomal protein S3A C-terminal domain (From Topology) | T: 40S ribosomal protein S3A C-terminal domain | F: Ribosomal_S3Ae_C | ECOD (1.6) |
E [auth Ae] | S4 | e6th6Ae1 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Alpha-L RNA-binding motif | F: S4 | ECOD (1.6) |
F [auth Af] | UNK_F_TYPE | e6th6Af3 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: UNK_F_TYPE | ECOD (1.6) |
F [auth Af] | KOW_1 | e6th6Af1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: KOW_1 | ECOD (1.6) |
F [auth Af] | RS4NT | e6th6Af2 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Alpha-L RNA-binding motif | F: RS4NT | ECOD (1.6) |
H [auth Ah] | Ribosomal_S6e | e6th6Ah1 | A: beta barrels | X: Ribosomal protein L25-like | H: Ribosomal protein L25-like (From Topology) | T: Ribosomal protein L25-like | F: Ribosomal_S6e | ECOD (1.6) |
I [auth Ai] | Ribosomal_S7 | e6th6Ai1 | A: alpha arrays | X: Ribosomal protein S7 (From Topology) | H: Ribosomal protein S7 (From Topology) | T: Ribosomal protein S7 | F: Ribosomal_S7 | ECOD (1.6) |
J [auth Aj] | Ribosomal_S8_N_1 | e6th6Aj2 | A: a+b two layers | X: R3H domain-like | H: Ribosomal protein S8, N-terminal domain (From Topology) | T: Ribosomal protein S8, N-terminal domain | F: Ribosomal_S8_N_1 | ECOD (1.6) |
J [auth Aj] | Ribosomal_S8_C_1 | e6th6Aj1 | A: a+b two layers | X: Ribosomal protein S8, C-terminal domain (From Topology) | H: Ribosomal protein S8, C-terminal domain (From Topology) | T: Ribosomal protein S8, C-terminal domain | F: Ribosomal_S8_C_1 | ECOD (1.6) |
K [auth Ak] | Ribosomal_S8e | e6th6Ak1 | A: beta barrels | X: Ribosomal protein L14-like | H: Ribosomal protein L14-related (From Topology) | T: Ribosomal protein L14-related | F: Ribosomal_S8e | ECOD (1.6) |
L [auth Al] | Ribosomal_S9 | e6th6Al1 | A: a+b two layers | X: Ribosomal protein S5 domain 2-like (From Topology) | H: Ribosomal protein S5 domain 2-like (From Topology) | T: Ribosomal protein S5 domain 2-like | F: Ribosomal_S9 | ECOD (1.6) |
M [auth Am] | Ribosomal_S10_1 | e6th6Am1 | A: a+b two layers | X: Alpha-beta plaits | H: Ribosomal protein S10 (From Topology) | T: Ribosomal protein S10 | F: Ribosomal_S10_1 | ECOD (1.6) |
N [auth An] | Ribosomal_S11 | e6th6An1 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: Ribosomal_S11 | ECOD (1.6) |
O [auth Ao] | Ribosom_S12_S23 | e6th6Ao1 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: Ribosom_S12_S23 | ECOD (1.6) |
P [auth Ap] | Ribosomal_S13 | e6th6Ap1 | A: alpha arrays | X: HhH/H2TH | H: H2TH (From Topology) | T: H2TH | F: Ribosomal_S13 | ECOD (1.6) |
Q [auth Aq] | Ribosomal_S13_N_1 | e6th6Aq1 | A: alpha arrays | X: HTH | H: 40S ribosomal protein S13 N-terminal domain (From Topology) | T: 40S ribosomal protein S13 N-terminal domain | F: Ribosomal_S13_N_1 | ECOD (1.6) |
Q [auth Aq] | Ribosomal_S15_2 | e6th6Aq2 | A: alpha arrays | X: S15/NS1 RNA-binding domain (From Topology) | H: S15/NS1 RNA-binding domain (From Topology) | T: S15/NS1 RNA-binding domain | F: Ribosomal_S15_2 | ECOD (1.6) |
R [auth Ar] | Ribosomal_S14_2 | e6th6Ar1 | A: few secondary structure elements | X: Glucocorticoid receptor-like | H: LIM domain-like | T: LIM domain-like | F: Ribosomal_S14_2 | ECOD (1.6) |
S [auth As] | Ribosomal_S17_1 | e6th6As1 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: Ribosomal_S17_1 | ECOD (1.6) |
T [auth At] | Ribosomal_S17e | e6th6At1 | A: alpha arrays | X: HTH | H: HTH | T: FF domain | F: Ribosomal_S17e | ECOD (1.6) |
U [auth Au] | Ribosomal_S19 | e6th6Au1 | A: a+b two layers | X: Ribosomal protein S19 (From Topology) | H: Ribosomal protein S19 (From Topology) | T: Ribosomal protein S19 | F: Ribosomal_S19 | ECOD (1.6) |
V [auth Av] | Ribosomal_S19e | e6th6Av1 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: Ribosomal_S19e | ECOD (1.6) |
W [auth Aw] | Ribosomal_S24e | e6th6Aw1 | A: a+b two layers | X: Alpha-beta plaits | H: Ribosomal proteins S24e, L23 and L15e (From Topology) | T: Ribosomal proteins S24e, L23 and L15e | F: Ribosomal_S24e | ECOD (1.6) |
X [auth Ax] | Ribosomal_S27e | e6th6Ax1 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: Ribosomal_S27e | ECOD (1.6) |
Y [auth Ay] | Ribosomal_S28e | e6th6Ay1 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: Ribosomal_S28e | ECOD (1.6) |
Z [auth Az] | HypA,zf-C2H2_19 | e6th6Az1 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: HypA,zf-C2H2_19 | ECOD (1.6) |
CA [auth BC] | Ribosomal_L2_1 | e6th6BC2 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: Ribosomal_L2_1 | ECOD (1.6) |
CA [auth BC] | Ribosomal_L2_C_2 | e6th6BC1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: Ribosomal_L2_C_2 | ECOD (1.6) |
DA [auth BD] | Ribosomal_L3 | e6th6BD1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Alanine racemase-C | F: Ribosomal_L3 | ECOD (1.6) |
EA [auth BE] | Ribosomal_L4 | e6th6BE1 | A: a/b three-layered sandwiches | X: Ribosomal protein L4 (From Topology) | H: Ribosomal protein L4 (From Topology) | T: Ribosomal protein L4 | F: Ribosomal_L4 | ECOD (1.6) |
FA [auth BF] | Ribosomal_L5_C | e6th6BF1 | A: a+b two layers | X: Ribosomal protein L5 (From Topology) | H: Ribosomal protein L5 (From Topology) | T: Ribosomal protein L5 | F: Ribosomal_L5_C | ECOD (1.6) |
GA [auth BG] | Ribosomal_L6_2 | e6th6BG1 | A: a+b two layers | X: Ribosomal protein L6 (From Topology) | H: Ribosomal protein L6 (From Topology) | T: Ribosomal protein L6 | F: Ribosomal_L6_2 | ECOD (1.6) |
GA [auth BG] | Ribosomal_L6 | e6th6BG2 | A: a+b two layers | X: Ribosomal protein L6 (From Topology) | H: Ribosomal protein L6 (From Topology) | T: Ribosomal protein L6 | F: Ribosomal_L6 | ECOD (1.6) |
HA [auth BH] | Ribosomal_L7Ae_1 | e6th6BH1 | A: a+b three layers | X: Bacillus chorismate mutase-like | H: L30e-like (From Topology) | T: L30e-like | F: Ribosomal_L7Ae_1 | ECOD (1.6) |
IA [auth BI] | Ribosomal_L7Ae_1 | e6th6BI1 | A: a+b three layers | X: Bacillus chorismate mutase-like | H: L30e-like (From Topology) | T: L30e-like | F: Ribosomal_L7Ae_1 | ECOD (1.6) |
JA [auth BJ] | Ribosomal_L16 | e6th6BJ1 | A: a+b complex topology | X: alpha/beta-Hammerhead/Barrel-sandwich hybrid | H: alpha/beta-Hammerhead/Barrel-sandwich hybrid | T: Ribosomal protein L10e | F: Ribosomal_L16 | ECOD (1.6) |
KA [auth BK] | Ribosomal_L13 | e6th6BK1 | A: a/b three-layered sandwiches | X: Ribosomal protein L13/L15p/L18e/L32e | H: Ribosomal protein L13 and L16-A (From Topology) | T: Ribosomal protein L13 and L16-A | F: Ribosomal_L13 | ECOD (1.6) |
LA [auth BL] | Ribosomal_L14 | e6th6BL1 | A: beta barrels | X: Ribosomal protein L14-like | H: Ribosomal protein L14-related (From Topology) | T: Ribosomal protein L14-related | F: Ribosomal_L14 | ECOD (1.6) |
MA [auth BM] | Ribosomal_L14e | e6th6BM1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: Ribosomal_L14e | ECOD (1.6) |
NA [auth BN] | Ribosomal_L14e | e6th6BN1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: Ribosomal_L14e | ECOD (1.6) |
OA [auth BO] | Ribosomal_L18 | e6th6BO1 | A: a/b three-layered sandwiches | X: Ribosomal protein L13/L15p/L18e/L32e | H: Ribosomal proteins L15p and L18e (From Topology) | T: Ribosomal proteins L15p and L18e | F: Ribosomal_L18 | ECOD (1.6) |
PA [auth BP] | Ribosomal_L15e | e6th6BP1 | A: a+b two layers | X: Alpha-beta plaits | H: Ribosomal proteins S24e, L23 and L15e (From Topology) | T: Ribosomal proteins S24e, L23 and L15e | F: Ribosomal_L15e | ECOD (1.6) |
QA [auth BQ] | Ribosomal_L5e | e6th6BQ1 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: Ribosomal_L5e | ECOD (1.6) |
RA [auth BR] | Ribosomal_L18 | e6th6BR1 | A: a/b three-layered sandwiches | X: Ribosomal protein L13/L15p/L18e/L32e | H: Ribosomal proteins L15p and L18e (From Topology) | T: Ribosomal proteins L15p and L18e | F: Ribosomal_L18 | ECOD (1.6) |
SA [auth BS] | Ribosomal_L19e_N | e6th6BS1 | A: alpha arrays | X: Ribosomal protein L19 (L19e) N-terminal domain (From Topology) | H: Ribosomal protein L19 (L19e) N-terminal domain (From Topology) | T: Ribosomal protein L19 (L19e) N-terminal domain | F: Ribosomal_L19e_N | ECOD (1.6) |
SA [auth BS] | Ribosomal_L19e_C | e6th6BS2 | A: alpha bundles | X: Ribosomal protein L19 (L19e) C-terminal domain (From Topology) | H: Ribosomal protein L19 (L19e) C-terminal domain (From Topology) | T: Ribosomal protein L19 (L19e) C-terminal domain | F: Ribosomal_L19e_C | ECOD (1.6) |
TA [auth BT] | Ribosomal_L18A | e6th6BT1 | A: a+b two layers | X: GP2-like | H: RplX-like (From Topology) | T: RplX-like | F: Ribosomal_L18A | ECOD (1.6) |
UA [auth BU] | Ribosomal_L21e | e6th6BU1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: Ribosomal_L21e | ECOD (1.6) |
VA [auth BV] | Ribosomal_L22 | e6th6BV1 | A: a+b two layers | X: Enolase-N/ribosomal protein | H: Ribosomal protein L22 (From Topology) | T: Ribosomal protein L22 | F: Ribosomal_L22 | ECOD (1.6) |
WA [auth BW] | Ribosomal_L23_1 | e6th6BW1 | A: a+b two layers | X: Alpha-beta plaits | H: Ribosomal proteins S24e, L23 and L15e (From Topology) | T: Ribosomal proteins S24e, L23 and L15e | F: Ribosomal_L23_1 | ECOD (1.6) |
XA [auth BX] | Ribosomal_L26 | e6th6BX1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: Ribosomal_L26 | ECOD (1.6) |
YA [auth BY] | Ribosomal_L24e | e6th6BY1 | A: few secondary structure elements | X: Glucocorticoid receptor-like | H: LIM domain-like | T: LIM domain-like | F: Ribosomal_L24e | ECOD (1.6) |
ZA [auth BZ] | Ribosomal_L29 | e6th6BZ1 | A: alpha bundles | X: Long alpha-hairpin | H: Ribosomal protein L29 (L29p) (From Topology) | T: Ribosomal protein L29 (L29p) | F: Ribosomal_L29 | ECOD (1.6) |
AB [auth Ba] | Ribosomal_L30_1 | e6th6Ba1 | A: a+b two layers | X: Ribosomal protein L30p/L7e (From Topology) | H: Ribosomal protein L30p/L7e (From Topology) | T: Ribosomal protein L30p/L7e | F: Ribosomal_L30_1 | ECOD (1.6) |
BB [auth Bb] | Ribosomal_L7Ae | e6th6Bb1 | A: a+b three layers | X: Bacillus chorismate mutase-like | H: L30e-like (From Topology) | T: L30e-like | F: Ribosomal_L7Ae | ECOD (1.6) |
CB [auth Bc] | Ribosomal_L31e | e6th6Bc1 | A: a+b two layers | X: Ribosomal protein L31e-like | H: Ribosomal protein L31e/gp120 outer domain (From Topology) | T: Ribosomal protein L31e/gp120 outer domain | F: Ribosomal_L31e | ECOD (1.6) |
DB [auth Bd] | Ribosomal_L32e | e6th6Bd1 | A: a/b three-layered sandwiches | X: Ribosomal protein L13/L15p/L18e/L32e | H: Ribosomal protein L32e (From Topology) | T: Ribosomal protein L32e | F: Ribosomal_L32e | ECOD (1.6) |
EB [auth Be] | Ribosomal_L34e | e6th6Be1 | A: few secondary structure elements | X: Glucocorticoid receptor-like | H: RPL34 (From Topology) | T: RPL34 | F: Ribosomal_L34e | ECOD (1.6) |
FB [auth Bg] | Ribosomal_L37ae | e6th6Bg1 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: Ribosomal_L37ae | ECOD (1.6) |
GB [auth Bh] | Ribosomal_L37e | e6th6Bh1 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: Ribosomal_L37e | ECOD (1.6) |
HB [auth Bi] | Ribosomal_L39 | e6th6Bi1 | A: extended segments | X: Ribosomal protein L39e (From Topology) | H: Ribosomal protein L39e (From Topology) | T: Ribosomal protein L39e | F: Ribosomal_L39 | ECOD (1.6) |
IB [auth Bj] | rpl40e | e6th6Bj1 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: rpl40e | ECOD (1.6) |
JB [auth Bk] | Ribosomal_L41_2 | e6th6Bk1 | A: extended segments | X: Ribosomal protein L41-A (From Topology) | H: Ribosomal protein L41-A (From Topology) | T: Ribosomal protein L41-A | F: Ribosomal_L41_2 | ECOD (1.6) |
KB [auth Bl] | Ribosomal_L44 | e6th6Bl1 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: Ribosomal_L44 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
B [auth Ab] | PF00318 | Ribosomal protein S2 (Ribosomal_S2) | Ribosomal protein S2 | - | Family |
C [auth Ac] | PF07650 | KH domain (KH_2) | KH domain | - | Domain |
C [auth Ac] | PF00189 | Ribosomal protein S3, C-terminal domain (Ribosomal_S3_C) | Ribosomal protein S3, C-terminal domain | This family contains a central domain Pfam:PF00013, hence the amino and carboxyl terminal domains are stored separately. This is a minimal carboxyl-terminal domain. Some are much longer. | Domain |
D [auth Ad] | PF01015 | Ribosomal S3Ae family (Ribosomal_S3Ae) | Ribosomal S3Ae family | - | Family |
E [auth Ae] | PF01479 | S4 domain (S4) | S4 domain | The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ... | Domain |
F [auth Af] | PF00900 | Ribosomal family S4e (Ribosomal_S4e) | Ribosomal family S4e | - | Family |
F [auth Af] | PF08071 | RS4NT (NUC023) domain (RS4NT) | RS4NT (NUC023) domain | This is the N-terminal domain of Ribosomal S4 / S4e proteins. This domain is associated with S4 and KOW domains [1]. | Domain |
F [auth Af] | PF01479 | S4 domain (S4) | S4 domain | The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ... | Domain |
G [auth Ag] | PF03719 | Ribosomal protein S5, C-terminal domain (Ribosomal_S5_C) | Ribosomal protein S5, C-terminal domain | - | Domain |
G [auth Ag] | PF00333 | Ribosomal protein S5, N-terminal domain (Ribosomal_S5) | Ribosomal protein S5, N-terminal domain | - | Domain |
H [auth Ah] | PF01092 | Ribosomal protein S6e (Ribosomal_S6e) | Ribosomal protein S6e | - | Family |
I [auth Ai] | PF00177 | Ribosomal protein S7p/S5e (Ribosomal_S7) | Ribosomal protein S7p/S5e | This family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes. | Domain |
J [auth Aj] | PF00410 | Ribosomal protein S8 (Ribosomal_S8) | Ribosomal protein S8 | - | Domain |
K [auth Ak] | PF01201 | Ribosomal protein S8e (Ribosomal_S8e) | Ribosomal protein S8e | - | Family |
L [auth Al] | PF00380 | Ribosomal protein S9/S16 (Ribosomal_S9) | Ribosomal protein S9/S16 | - | Family |
M [auth Am] | PF00338 | Ribosomal protein S10p/S20e (Ribosomal_S10) | Ribosomal protein S10p/S20e | This family includes small ribosomal subunit S10 from prokaryotes and S20 from eukaryotes. | Domain |
N [auth An] | PF00411 | Ribosomal protein S11 (Ribosomal_S11) | Ribosomal protein S11 | - | Family |
O [auth Ao] | PF00164 | Ribosomal protein S12/S23 (Ribosom_S12_S23) | Ribosomal protein S12/S23 | - | Family |
P [auth Ap] | PF00416 | Ribosomal protein S13/S18 (Ribosomal_S13) | Ribosomal protein S13/S18 | - | Family |
Q [auth Aq] | PF08069 | Ribosomal S13/S15 N-terminal domain (Ribosomal_S13_N) | Ribosomal S13/S15 N-terminal domain | This domain is found at the N-terminus of ribosomal S13 and S15 proteins. This domain is also identified as NUC021 [1]. | Domain |
Q [auth Aq] | PF00312 | Ribosomal protein S15 (Ribosomal_S15) | Ribosomal protein S15 | - | Domain |
R [auth Ar] | PF00253 | Ribosomal protein S14p/S29e (Ribosomal_S14) | Ribosomal protein S14p/S29e | - | Family |
S [auth As] | PF00366 | Ribosomal protein S17 (Ribosomal_S17) | Ribosomal protein S17 | - | Domain |
T [auth At] | PF00833 | Ribosomal S17 (Ribosomal_S17e) | Ribosomal S17 | - | Family |
U [auth Au] | PF00203 | Ribosomal protein S19 (Ribosomal_S19) | Ribosomal protein S19 | - | Domain |
V [auth Av] | PF01090 | Ribosomal protein S19e (Ribosomal_S19e) | Ribosomal protein S19e | - | Family |
W [auth Aw] | PF01282 | Ribosomal protein S24e (Ribosomal_S24e) | Ribosomal protein S24e | - | Family |
X [auth Ax] | PF01667 | Ribosomal protein S27 (Ribosomal_S27e) | Ribosomal protein S27 | - | Family |
Y [auth Ay] | PF01200 | Ribosomal protein S28e (Ribosomal_S28e) | Ribosomal protein S28e | - | Family |
Z [auth Az] | PF07754 | Small zinc finger protein HVO_2753-like, Zn-binding pocket (HVO_2753_ZBP) | Small zinc finger protein HVO_2753-like, Zn-binding pocket | This domain is found in many archaeal proteins, including HVO_2753 (also known as Small CPxCG-related zinc finger protein) from Haloferax volcanii [1]. NMR 3D structure analysis revealed the content of four C(P)XCG motifs, suggesting the presence of ... | Domain |
CA [auth BC] | PF03947 | Ribosomal Proteins L2, C-terminal domain (Ribosomal_L2_C) | Ribosomal Proteins L2, C-terminal domain | - | Domain |
CA [auth BC] | PF00181 | Ribosomal Proteins L2, RNA binding domain (Ribosomal_L2) | Ribosomal Proteins L2, RNA binding domain | - | Domain |
DA [auth BD] | PF00297 | Ribosomal protein L3 (Ribosomal_L3) | Ribosomal protein L3 | - | Family |
EA [auth BE] | PF00573 | Ribosomal protein L4/L1 family (Ribosomal_L4) | Ribosomal protein L4/L1 family | - | Family |
FA [auth BF] | PF00281 | Ribosomal protein L5 (Ribosomal_L5) | Ribosomal protein L5 | - | Domain |
FA [auth BF] | PF00673 | ribosomal L5P family C-terminus (Ribosomal_L5_C) | ribosomal L5P family C-terminus | This region is found associated with Pfam:PF00281. | Domain |
GA [auth BG] | PF00347 | Ribosomal protein L6 (Ribosomal_L6) | Ribosomal protein L6 | - | Domain |
HA [auth BH], IA [auth BI] | PF01248 | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae) | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family | This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ... | Domain |
JA [auth BJ] | PF00252 | Ribosomal protein L16p/L10e (Ribosomal_L16) | Ribosomal protein L16p/L10e | - | Domain |
KA [auth BK] | PF00572 | Ribosomal protein L13 (Ribosomal_L13) | Ribosomal protein L13 | - | Family |
LA [auth BL] | PF00238 | Ribosomal protein L14p/L23e (Ribosomal_L14) | Ribosomal protein L14p/L23e | - | Domain |
OA [auth BO] | PF00828 | Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A (Ribosomal_L27A) | Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A | - | Family |
PA [auth BP] | PF00827 | Ribosomal L15 (Ribosomal_L15e) | Ribosomal L15 | - | Family |
QA [auth BQ] | PF17144 | Ribosomal large subunit proteins 60S L5, and 50S L18 (Ribosomal_L5e) | Ribosomal large subunit proteins 60S L5, and 50S L18 | - | Family |
RA [auth BR] | PF17135 | Ribosomal protein 60S L18 and 50S L18e (Ribosomal_L18) | Ribosomal protein 60S L18 and 50S L18e | - | Family |
SA [auth BS] | PF01280 | Ribosomal protein L19e (Ribosomal_L19e) | Ribosomal protein L19e | - | Family |
TA [auth BT] | PF01775 | Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A (Ribosomal_L18A) | Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A | This family includes: archaeal 50S ribosomal protein L18Ae, often referred to as L20e or LX; fungal 60S ribosomal protein L20; and higher eukaryote 60S ribosomal protein L18A. | Domain |
UA [auth BU] | PF01157 | Ribosomal protein L21e (Ribosomal_L21e) | Ribosomal protein L21e | - | Family |
VA [auth BV] | PF00237 | Ribosomal protein L22p/L17e (Ribosomal_L22) | Ribosomal protein L22p/L17e | This family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes. | Domain |
WA [auth BW] | PF00276 | Ribosomal protein L23 (Ribosomal_L23) | Ribosomal protein L23 | - | Family |
XA [auth BX] | PF16906 | Ribosomal proteins L26 eukaryotic, L24P archaeal (Ribosomal_L26) | Ribosomal proteins L26 eukaryotic, L24P archaeal | - | Family |
XA [auth BX] | PF00467 | KOW motif (KOW) | KOW motif | - | Family |
YA [auth BY] | PF01246 | Ribosomal protein L24e (Ribosomal_L24e) | Ribosomal protein L24e | - | Domain |
ZA [auth BZ] | PF00831 | Ribosomal L29 protein (Ribosomal_L29) | Ribosomal L29 protein | - | Family |
AB [auth Ba] | PF00327 | Ribosomal protein L30p/L7e (Ribosomal_L30) | Ribosomal protein L30p/L7e | This family includes prokaryotic L30 and eukaryotic L7. | Domain |
BB [auth Bb] | PF01248 | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae) | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family | This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ... | Domain |
CB [auth Bc] | PF01198 | Ribosomal protein L31e (Ribosomal_L31e) | Ribosomal protein L31e | - | Family |
DB [auth Bd] | PF01655 | Ribosomal protein L32 (Ribosomal_L32e) | Ribosomal protein L32 | - | Family |
EB [auth Be] | PF01199 | Ribosomal protein L34e (Ribosomal_L34e) | Ribosomal protein L34e | - | Family |
FB [auth Bg] | PF01780 | Ribosomal L37ae protein family (Ribosomal_L37ae) | Ribosomal L37ae protein family | - | Family |
GB [auth Bh] | PF01907 | Ribosomal protein L37e (Ribosomal_L37e) | Ribosomal protein L37e | - | Family |
HB [auth Bi] | PF00832 | Ribosomal L39 protein (Ribosomal_L39) | Ribosomal L39 protein | - | Family |
KB [auth Bl] | PF00935 | Ribosomal protein L44 (Ribosomal_L44) | Ribosomal protein L44 | - | Family |