4A8C

Symmetrized cryo-EM reconstruction of E. coli DegQ 12-mer in complex with a binding peptide


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2B SuperfamilyTrypsin-like serine proteases 8073980 3000114 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyTrypsin-like serine proteases 8073980 3000114 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyTrypsin-like serine proteases 8073980 3000114 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyTrypsin-like serine proteases 8073980 3000114 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyTrypsin-like serine proteases 8073980 3000114 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyTrypsin-like serine proteases 8073980 3000114 SCOP2B (2022-06-29)
GSCOP2B SuperfamilyTrypsin-like serine proteases 8073980 3000114 SCOP2B (2022-06-29)
HSCOP2B SuperfamilyTrypsin-like serine proteases 8073980 3000114 SCOP2B (2022-06-29)
ISCOP2B SuperfamilyTrypsin-like serine proteases 8073980 3000114 SCOP2B (2022-06-29)
JSCOP2B SuperfamilyTrypsin-like serine proteases 8073980 3000114 SCOP2B (2022-06-29)
KSCOP2B SuperfamilyTrypsin-like serine proteases 8073980 3000114 SCOP2B (2022-06-29)
LSCOP2B SuperfamilyTrypsin-like serine proteases 8073980 3000114 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
ATrypsin_2e4a8cA1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: FMN-binding split barrel 2F: Trypsin_2ECOD (1.6)
APDZ_2e4a8cA3 A: beta barrelsX: PDZ domain (From Topology)H: PDZ domain (From Topology)T: PDZ domainF: PDZ_2ECOD (1.6)
BTrypsin_2e4a8cB1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: FMN-binding split barrel 2F: Trypsin_2ECOD (1.6)
BPDZ_2e4a8cB3 A: beta barrelsX: PDZ domain (From Topology)H: PDZ domain (From Topology)T: PDZ domainF: PDZ_2ECOD (1.6)
CTrypsin_2e4a8cC1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: FMN-binding split barrel 2F: Trypsin_2ECOD (1.6)
CPDZ_2e4a8cC3 A: beta barrelsX: PDZ domain (From Topology)H: PDZ domain (From Topology)T: PDZ domainF: PDZ_2ECOD (1.6)
DTrypsin_2e4a8cD1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: FMN-binding split barrel 2F: Trypsin_2ECOD (1.6)
DPDZ_2e4a8cD3 A: beta barrelsX: PDZ domain (From Topology)H: PDZ domain (From Topology)T: PDZ domainF: PDZ_2ECOD (1.6)
ETrypsin_2e4a8cE1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: FMN-binding split barrel 2F: Trypsin_2ECOD (1.6)
EPDZ_2e4a8cE3 A: beta barrelsX: PDZ domain (From Topology)H: PDZ domain (From Topology)T: PDZ domainF: PDZ_2ECOD (1.6)
FTrypsin_2e4a8cF1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: FMN-binding split barrel 2F: Trypsin_2ECOD (1.6)
FPDZ_2e4a8cF3 A: beta barrelsX: PDZ domain (From Topology)H: PDZ domain (From Topology)T: PDZ domainF: PDZ_2ECOD (1.6)
GTrypsin_2e4a8cG1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: FMN-binding split barrel 2F: Trypsin_2ECOD (1.6)
GPDZ_2e4a8cG3 A: beta barrelsX: PDZ domain (From Topology)H: PDZ domain (From Topology)T: PDZ domainF: PDZ_2ECOD (1.6)
HTrypsin_2e4a8cH1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: FMN-binding split barrel 2F: Trypsin_2ECOD (1.6)
HPDZ_2e4a8cH3 A: beta barrelsX: PDZ domain (From Topology)H: PDZ domain (From Topology)T: PDZ domainF: PDZ_2ECOD (1.6)
ITrypsin_2e4a8cI1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: FMN-binding split barrel 2F: Trypsin_2ECOD (1.6)
IPDZ_2e4a8cI3 A: beta barrelsX: PDZ domain (From Topology)H: PDZ domain (From Topology)T: PDZ domainF: PDZ_2ECOD (1.6)
JTrypsin_2e4a8cJ1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: FMN-binding split barrel 2F: Trypsin_2ECOD (1.6)
JPDZ_2e4a8cJ3 A: beta barrelsX: PDZ domain (From Topology)H: PDZ domain (From Topology)T: PDZ domainF: PDZ_2ECOD (1.6)
KTrypsin_2e4a8cK1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: FMN-binding split barrel 2F: Trypsin_2ECOD (1.6)
KPDZ_2e4a8cK3 A: beta barrelsX: PDZ domain (From Topology)H: PDZ domain (From Topology)T: PDZ domainF: PDZ_2ECOD (1.6)
LTrypsin_2e4a8cL1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: FMN-binding split barrel 2F: Trypsin_2ECOD (1.6)
LPDZ_2e4a8cL3 A: beta barrelsX: PDZ domain (From Topology)H: PDZ domain (From Topology)T: PDZ domainF: PDZ_2ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B, C, D, E
PF13365Trypsin-like peptidase domain (Trypsin_2)Trypsin-like peptidase domainThis family includes trypsin-like peptidase domains.Domain
A, B, C, D, E
PF00595PDZ domain (PDZ)PDZ domainPDZ domains are found in diverse signaling proteins.Domain

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B, C, D, E
IPR009003Peptidase S1, PA clanHomologous Superfamily
A, B, C, D, E
IPR011782Peptidase S1C, DoFamily
A, B, C, D, E
IPR001478PDZ domainDomain
A, B, C, D, E
IPR001940Peptidase S1CFamily
A, B, C, D, E
IPR036034PDZ superfamilyHomologous Superfamily