3IET
Crystal Structure of 237mAb with antigen
- PDB DOI: https://doi.org/10.2210/pdb3IET/pdb
- Classification: IMMUNE SYSTEM
- Organism(s): Mus musculus
- Expression System: Mus musculus
- Mutation(s): No 
- Deposited: 2009-07-23 Released: 2010-06-23 
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.20 Å
- R-Value Free: 0.271 
- R-Value Work: 0.227 
- R-Value Observed: 0.229 
wwPDB Validation   3D Report Full Report
This is version 2.1 of the entry. See complete history. 
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Immunoglobulin light chain (IgG2a) | 217 | Mus musculus | Mutation(s): 0  | ||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Sequence AnnotationsExpand | |||||
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Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 2 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Immunoglobulin heavy chain (IgG2a) | 218 | Mus musculus | Mutation(s): 0  | ||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Sequence AnnotationsExpand | |||||
|
Find similar proteins by: Sequence | 3D Structure
Entity ID: 3 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Podoplanin | E [auth X], F [auth Q] | 9 | Mus musculus | Mutation(s): 0  Gene Names: Pdpn, RP23-348F1.2-002 | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for Q62011 (Mus musculus) Explore Q62011  Go to UniProtKB:  Q62011 | |||||
IMPC:  MGI:103098 | |||||
Entity Groups   | |||||
UniProt Group | Q62011 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
Ligands 2 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
A2G Query on A2G | K [auth X], L [auth Q] | 2-acetamido-2-deoxy-alpha-D-galactopyranose C8 H15 N O6 OVRNDRQMDRJTHS-CBQIKETKSA-N | |||
ZN Query on ZN | G [auth A], H [auth B], I [auth C], J [auth D] | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.20 Å
- R-Value Free: 0.271 
- R-Value Work: 0.227 
- R-Value Observed: 0.229 
- Space Group: C 1 2 1
Unit Cell:
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 277.91 | α = 90 |
b = 38.24 | β = 108.99 |
c = 95.91 | γ = 90 |
Software Name | Purpose |
---|---|
d*TREK | data processing |
PHENIX | refinement |
PDB_EXTRACT | data extraction |
CrystalClear | data collection |
d*TREK | data reduction |
d*TREK | data scaling |
PHASER | phasing |
Entry History 
Deposition Data
- Released Date: 2010-06-23  Deposition Author(s): Brooks, C.L., Evans, S.V., Borisova, S.N.
Revision History (Full details and data files)
- Version 1.0: 2010-06-23
Type: Initial release - Version 1.1: 2011-07-13
Changes: Version format compliance - Version 2.0: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Atomic model, Data collection, Derived calculations, Structure summary - Version 2.1: 2023-09-06
Changes: Data collection, Database references, Refinement description, Structure summary