Download MendeleyCrystallographic study of the complex of Ni(II) Schiff base complex and HEW Lysozyme
Koley Seth, B., Ray, A., Biswas, S., Basu, S.To be published.
4KXI
Crystallographic study of the complex of Ni(II) Schiff base complex and HEW Lysozyme
- PDB DOI: https://doi.org/10.2210/pdb4KXI/pdb
- Classification: HYDROLASE
- Organism(s): Gallus gallus
- Mutation(s): No
- Deposited: 2013-05-27 Released: 2014-05-28
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.00 Å
- R-Value Free: 0.256
- R-Value Work: 0.242
- R-Value Observed: 0.242
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Lysozyme C | 129 | Gallus gallus | Mutation(s): 0 EC: 3.2.1.17 |  | |
UniProt | |||||
Find proteins for P00698 (Gallus gallus) Explore P00698 Go to UniProtKB: P00698 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P00698 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 4 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| SNF Query on SNF | C [auth A] | (N1E, N2E)-N1, N2-bis(pyridine-2-ylmethylene)propane-1,2-diamine, nickel(II) salt C15 H16 N4 Ni YWFIBUKMYHZULK-UBTITEMDSA-N |  | ||
| LCP Query on LCP | D [auth A], E [auth A], F [auth A], G [auth A], H [auth A] | PERCHLORATE ION Cl O4 VLTRZXGMWDSKGL-UHFFFAOYSA-M |  | ||
| NI Query on NI | B [auth A] | NICKEL (II) ION Ni VEQPNABPJHWNSG-UHFFFAOYSA-N |  | ||
| CL Query on CL | I [auth A] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.00 Å
- R-Value Free: 0.256
- R-Value Work: 0.242
- R-Value Observed: 0.242
- Space Group: P 43 21 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 77.589 | α = 90 |
| b = 77.589 | β = 90 |
| c = 36.39 | γ = 90 |
| Software Name | Purpose |
|---|---|
| CNS | refinement |
| MAR345dtb | data collection |
| AUTOMAR | data reduction |
| MOLREP | phasing |
Entry History
Deposition Data
- Released Date: 2014-05-28 Deposition Author(s): Koley Seth, B., Ray, A., Basu, S., Biswas, S.
Revision History (Full details and data files)
- Version 1.0: 2014-05-28
Type: Initial release - Version 1.1: 2023-11-08
Changes: Data collection, Database references, Derived calculations, Refinement description
