5E24

Structure of the Su(H)-Hairless-DNA Repressor Complex


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.14 Å
  • R-Value Free: 0.193 
  • R-Value Work: 0.173 
  • R-Value Observed: 0.174 

wwPDB Validation   3D Report Full Report


This is version 2.1 of the entry. See complete history


Literature

Structure and Function of the Su(H)-Hairless Repressor Complex, the Major Antagonist of Notch Signaling in Drosophila melanogaster.

Yuan, Z.Praxenthaler, H.Tabaja, N.Torella, R.Preiss, A.Maier, D.Kovall, R.A.

(2016) PLoS Biol 14: e1002509-e1002509

  • DOI: https://doi.org/10.1371/journal.pbio.1002509
  • Primary Citation of Related Structures:  
    5E24

  • PubMed Abstract: 

    Notch is a conserved signaling pathway that specifies cell fates in metazoans. Receptor-ligand interactions induce changes in gene expression, which is regulated by the transcription factor CBF1/Su(H)/Lag-1 (CSL). CSL interacts with coregulators to repress and activate transcription from Notch target genes. While the molecular details of the activator complex are relatively well understood, the structure-function of CSL-mediated repressor complexes is poorly defined. In Drosophila, the antagonist Hairless directly binds Su(H) (the fly CSL ortholog) to repress transcription from Notch targets. Here, we determine the X-ray structure of the Su(H)-Hairless complex bound to DNA. Hairless binding produces a large conformational change in Su(H) by interacting with residues in the hydrophobic core of Su(H), illustrating the structural plasticity of CSL molecules to interact with different binding partners. Based on the structure, we designed mutants in Hairless and Su(H) that affect binding, but do not affect formation of the activator complex. These mutants were validated in vitro by isothermal titration calorimetry and yeast two- and three-hybrid assays. Moreover, these mutants allowed us to solely characterize the repressor function of Su(H) in vivo.


  • Organizational Affiliation

    Department of Molecular Genetics, Biochemistry and Microbiology, University of Cincinnati College of Medicine, Cincinnati, Ohio, United States of America.


Macromolecules

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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Maltose-binding periplasmic protein
A, C
370Escherichia coli O157:H7Mutation(s): 6 
Gene Names: malEZ5632ECs5017
UniProt
Find proteins for P0AEX9 (Escherichia coli (strain K12))
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Go to UniProtKB:  P0AEX9
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UniProt GroupP0AEX9
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  • Reference Sequence
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Protein hairless
B, D
38Drosophila melanogasterMutation(s): 0 
Gene Names: HCG5460
UniProt
Find proteins for Q02308 (Drosophila melanogaster)
Explore Q02308 
Go to UniProtKB:  Q02308
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UniProt GroupQ02308
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Suppressor of hairless protein
E, F
424Drosophila melanogasterMutation(s): 2 
Gene Names: Su(H)dRBP-JKCG3497
UniProt
Find proteins for P28159 (Drosophila melanogaster)
Explore P28159 
Go to UniProtKB:  P28159
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UniProt GroupP28159
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Entity ID: 4
MoleculeChains LengthOrganismImage
DNA (5'-D(*AP*AP*TP*CP*TP*TP*TP*CP*CP*CP*AP*CP*AP*GP*T)-3')15Mus musculus
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Entity ID: 5
MoleculeChains LengthOrganismImage
DNA (5'-D(*TP*TP*AP*CP*TP*GP*TP*GP*GP*GP*AP*AP*AP*GP*A)-3')15Mus musculus
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Oligosaccharides

Help

Entity ID: 6
MoleculeChains Length2D Diagram Glycosylation3D Interactions
alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose
I, J
4N/A
Glycosylation Resources
GlyTouCan:  G87171PZ
GlyCosmos:  G87171PZ
GlyGen:  G87171PZ
Small Molecules
Ligands 1 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
EDO
Query on EDO

Download Ideal Coordinates CCD File 
AA [auth A]
AB [auth A]
AC [auth E]
AD [auth F]
BA [auth A]
AA [auth A],
AB [auth A],
AC [auth E],
AD [auth F],
BA [auth A],
BB [auth A],
BC [auth E],
BD [auth F],
CA [auth A],
CB [auth A],
CC [auth E],
CD [auth F],
DA [auth A],
DB [auth A],
DC [auth E],
DD [auth F],
EA [auth A],
EB [auth A],
EC [auth E],
ED [auth F],
FA [auth A],
FB [auth A],
FC [auth E],
FD [auth F],
GA [auth A],
GB [auth C],
GC [auth E],
GD [auth F],
HA [auth A],
HB [auth C],
HC [auth E],
HD [auth F],
IA [auth A],
IB [auth C],
IC [auth E],
ID [auth F],
JA [auth A],
JB [auth C],
JC [auth E],
JD [auth F],
K [auth A],
KA [auth A],
KB [auth C],
KC [auth E],
KD [auth F],
L [auth A],
LA [auth A],
LB [auth C],
LC [auth E],
LD [auth F],
M [auth A],
MA [auth A],
MB [auth C],
MC [auth E],
MD [auth F],
N [auth A],
NA [auth A],
NB [auth C],
NC [auth E],
ND [auth F],
O [auth A],
OA [auth A],
OB [auth C],
OC [auth E],
OD [auth F],
P [auth A],
PA [auth A],
PB [auth C],
PC [auth E],
PD [auth F],
Q [auth A],
QA [auth A],
QB [auth C],
QC [auth E],
QD [auth F],
R [auth A],
RA [auth A],
RB [auth C],
RC [auth E],
RD [auth F],
S [auth A],
SA [auth A],
SB [auth C],
SC [auth E],
SD [auth F],
T [auth A],
TA [auth A],
TB [auth C],
TC [auth E],
U [auth A],
UA [auth A],
UB [auth D],
UC [auth F],
V [auth A],
VA [auth A],
VB [auth D],
VC [auth F],
W [auth A],
WA [auth A],
WB [auth E],
WC [auth F],
X [auth A],
XA [auth A],
XB [auth E],
XC [auth F],
Y [auth A],
YA [auth A],
YB [auth E],
YC [auth F],
Z [auth A],
ZA [auth A],
ZB [auth E],
ZC [auth F]
1,2-ETHANEDIOL
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
Biologically Interesting Molecules (External Reference) 1 Unique
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.14 Å
  • R-Value Free: 0.193 
  • R-Value Work: 0.173 
  • R-Value Observed: 0.174 
  • Space Group: C 1 2 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 177.71α = 90
b = 93.89β = 109.83
c = 154.39γ = 90
Software Package:
Software NamePurpose
BUSTERrefinement
PDB_EXTRACTdata extraction
XDSdata reduction
XDSdata scaling
PHENIXphasing

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Cancer Institute (NIH/NCI)United StatesCA178974

Revision History  (Full details and data files)

  • Version 1.0: 2016-06-15
    Type: Initial release
  • Version 1.1: 2016-07-20
    Changes: Database references
  • Version 1.2: 2017-09-27
    Changes: Author supporting evidence, Derived calculations
  • Version 1.3: 2019-12-04
    Changes: Author supporting evidence
  • Version 2.0: 2020-07-29
    Type: Remediation
    Reason: Carbohydrate remediation
    Changes: Atomic model, Data collection, Derived calculations, Non-polymer description, Structure summary
  • Version 2.1: 2023-09-27
    Changes: Data collection, Database references, Refinement description, Structure summary