Download MendeleyLigand-dependent interaction of anticancer ruthenium complexes with hen egg white lysozyme and human lysozyme
Oszajca, M., Kurpiewska, K., Halajko, P., Szura, A., Lewinski, K., Brindell, M.To be published.
5LVG
Hen Egg White Lysozyme co-crystallized with cis-Ru(DMSO)4Cl2
- PDB DOI: https://doi.org/10.2210/pdb5LVG/pdb
- Classification: HYDROLASE
- Organism(s): Gallus gallus
- Expression System: Gallus gallus
- Mutation(s): No
- Deposited: 2016-09-14 Released: 2016-09-21
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.00 Å
- R-Value Free: 0.233
- R-Value Work: 0.158
- R-Value Observed: 0.162
wwPDB Validation 3D Report Full Report
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Lysozyme C | 129 | Gallus gallus | Mutation(s): 0 Gene Names: LYZ EC: 3.2.1.17 |  | |
UniProt | |||||
Find proteins for P00698 (Gallus gallus) Explore P00698 Go to UniProtKB: P00698 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P00698 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 4 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| RU Query on RU | B [auth A] | RUTHENIUM ION Ru BPEVHDGLPIIAGH-UHFFFAOYSA-N |  | ||
| ACT Query on ACT | G [auth A], H [auth A], I [auth A], J [auth A] | ACETATE ION C2 H3 O2 QTBSBXVTEAMEQO-UHFFFAOYSA-M |  | ||
| CL Query on CL | C [auth A], D [auth A], E [auth A], F [auth A] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |  | ||
| NA Query on NA | K [auth A] | SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.00 Å
- R-Value Free: 0.233
- R-Value Work: 0.158
- R-Value Observed: 0.162
- Space Group: P 43 21 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 78.199 | α = 90 |
| b = 78.199 | β = 90 |
| c = 37.189 | γ = 90 |
| Software Name | Purpose |
|---|---|
| Aimless | data scaling |
| PHASER | phasing |
| REFMAC | refinement |
| PDB_EXTRACT | data extraction |
| CrysalisPro | data reduction |
| PHASER | phasing |
Entry History
Deposition Data
- Released Date: 2016-09-21 Deposition Author(s): Kurpiewska, K., Halajko, P., Lewinski, K.
Revision History (Full details and data files)
- Version 1.0: 2016-09-21
Type: Initial release - Version 1.1: 2023-12-20
Changes: Data collection, Database references, Derived calculations, Structure summary - Version 1.2: 2024-01-17
Changes: Refinement description
