5YIN

Hen egg-white lysozyme precipitant-free orthorhombic form

• PDB DOI: https://doi.org/10.2210/pdb5YIN/pdb

• Classification: HYDROLASE
• Organism(s): Gallus gallus
• Expression System: Gallus gallus
• Mutation(s): No 


• Deposited: 2017-10-06 Released: 2018-07-25 
• Deposition Author(s): Suzuki, Y., Tsuge, H., Uehara, Y.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.66 Å
• R-Value Free: 0.213 
• R-Value Work: 0.173 
• R-Value Observed: 0.175 

Literature

Precipitant-free lysozyme crystals grown by centrifugal concentration reveal structural changes

Suzuki, Y., Tsuge, H., Hondoh, H., Kato, Y., Uehara, Y., Maita, N., Hosokawa, K., Ueta, S.

(2018) Cryst Growth Des 

• DOI: https://doi.org/10.1021/acs.cgd.8b00326

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Biological Assembly Evidence: microscopy

Macromolecule Content

• Total Structure Weight: 14.33 kDa 
• Atom Count: 1,142 
• Modelled Residue Count: 129 
• Deposited Residue Count: 129 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Lysozyme C	A	129	Gallus gallus	Mutation(s): 0  Gene Names: LYZ EC: 3.2.1.17
UniProt
Find proteins for P00698 (Gallus gallus) Explore P00698  Go to UniProtKB:  P00698

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.66 Å
• R-Value Free: 0.213 
• R-Value Work: 0.173 
• R-Value Observed: 0.175 
• Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 30.49	α = 90
b = 58.04	β = 90
c = 67.33	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
iMOSFLM	data reduction
Aimless	data scaling
MOLREP	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2018-07-25 
Deposition Author(s): Suzuki, Y., Tsuge, H., Uehara, Y.

Revision History  

• Version 1.0: 2018-07-25
  Type: Initial release