6D6F
Triclinic lysozyme cryocooled to 100 K with 47% xylose as cryoprotectant
- PDB DOI: https://doi.org/10.2210/pdb6D6F/pdb
- Classification: HYDROLASE
- Organism(s): Gallus gallus
- Mutation(s): No
- Deposited: 2018-04-20 Released: 2018-09-19
- Funding Organization(s): National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.00 Å
- R-Value Free: 0.200
- R-Value Work: 0.137
- R-Value Observed: 0.140
This is version 1.3 of the entry. See complete history.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Lysozyme C | 129 | Gallus gallus | Mutation(s): 0 EC: 3.2.1.17 |  | |
UniProt | |||||
Find proteins for P00698 (Gallus gallus) Explore P00698 Go to UniProtKB: P00698 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P00698 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| XYS Query on XYS | I [auth A] | alpha-D-xylopyranose C5 H10 O5 SRBFZHDQGSBBOR-LECHCGJUSA-N |  | ||
| NO3 Query on NO3 | B [auth A] C [auth A] D [auth A] E [auth A] F [auth A] | NITRATE ION N O3 NHNBFGGVMKEFGY-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.00 Å
- R-Value Free: 0.200
- R-Value Work: 0.137
- R-Value Observed: 0.140
- Space Group: P 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 26.956 | α = 88.23 |
| b = 31.864 | β = 71.54 |
| c = 33.991 | γ = 68.51 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| SCALA | data scaling |
| CrysalisPro | data collection |
Entry History & Funding Information
Deposition Data
- Released Date: 2018-09-19 Deposition Author(s): Juers, D.H.
| Funding Organization | Location | Grant Number |
|---|---|---|
| National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS) | United States | 2R15GM090248 |
Revision History (Full details and data files)
- Version 1.0: 2018-09-19
Type: Initial release - Version 1.1: 2018-10-31
Changes: Data collection, Database references - Version 1.2: 2020-01-01
Changes: Author supporting evidence, Data collection - Version 1.3: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Data collection, Derived calculations, Structure summary
