6KL1

Crystal structure of the S65T/F99S/M153T/V163A variant of non-deuterated GFP at pD 8.5


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 0.85 Å
  • R-Value Free: 0.118 
  • R-Value Work: 0.103 
  • R-Value Observed: 0.104 

wwPDB Validation   3D Report Full Report


This is version 2.1 of the entry. See complete history


Literature

X-ray crystallographic studies on the hydrogen isotope effects of green fluorescent protein at sub-angstrom resolutions

Tai, Y.Takaba, K.Hanazono, Y.Dao, H.A.Miki, K.Takeda, K.

(2019) Acta Crystallogr D Biol Crystallogr 75: 1096-1106


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Green fluorescent protein229Aequorea victoriaMutation(s): 4 
Gene Names: GFP
UniProt
Find proteins for P42212 (Aequorea victoria)
Explore P42212 
Go to UniProtKB:  P42212
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP42212
Sequence Annotations
Expand
  • Reference Sequence
Small Molecules
Modified Residues  1 Unique
IDChains TypeFormula2D DiagramParent
CRO
Query on CRO
A
L-PEPTIDE LINKINGC15 H17 N3 O5THR, TYR, GLY
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 0.85 Å
  • R-Value Free: 0.118 
  • R-Value Work: 0.103 
  • R-Value Observed: 0.104 
  • Space Group: P 21 21 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 50.915α = 90
b = 62.107β = 90
c = 68.865γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
SHELXLrefinement
DENZOdata reduction
MOLREPphasing
PDB_EXTRACTdata extraction
SCALEPACKdata scaling

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Japan Society for the Promotion of ScienceJapan17H03643
Ministry of Education, Culture, Sports, Science and Technology (Japan)JapanPhoton and Quantum Basic Research Coordinated Development Program

Revision History  (Full details and data files)

  • Version 1.0: 2019-12-11
    Type: Initial release
  • Version 2.0: 2023-11-15
    Changes: Atomic model, Data collection, Database references
  • Version 2.1: 2023-11-22
    Changes: Refinement description