6RQT

RNA Polymerase I-tWH-Rrn3-DNA

• PDB DOI: https://doi.org/10.2210/pdb6RQT/pdb
• NAKB: 6RQT
• EM Map EMD-4985: EMDB EMDataResource

• Classification: TRANSCRIPTION
• Organism(s): synthetic construct, Saccharomyces cerevisiae
• Expression System: Saccharomyces cerevisiae, Escherichia coli
• Mutation(s): No 


• Deposited: 2019-05-16 Released: 2019-12-11 
• Deposition Author(s): Mueller, C.W., Sadian, Y., Tafur, L.
• Funding Organization(s): European Research Council

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Experimental Data Snapshot

• Method: ELECTRON MICROSCOPY
• Resolution: 4.00 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

Literature

RNA Polymerase I-tWH-Rrn3-DNA

Mueller, C.W., Sadian, Y., Tafur, L.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Hetero 15-mer - A1B1C1D1E1F1G1H1I1J1K1L1M1N1O1 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly Evidence: gel filtration

Macromolecule Content

• Total Structure Weight: 706.35 kDa 
• Atom Count: 39,820 
• Modelled Residue Count: 4,947 
• Deposited Residue Count: 6,003 
• Unique protein chains: 15
• Unique nucleic acid chains: 2

Macromolecules

Entity ID: 3
Molecule	Chains	Sequence Length	Organism	Details	Image
DNA-directed RNA polymerase I subunit RPA190	C [auth A]	1,664	Saccharomyces cerevisiae	Mutation(s): 0  Gene Names: RPA190, RPA1, RRN1, YOR341W, O6276 EC: 2.7.7.6
UniProt
Find proteins for P10964 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P10964  Go to UniProtKB:  P10964

Entity ID: 4
Molecule	Chains	Sequence Length	Organism	Details	Image
DNA-directed RNA polymerase I subunit RPA135	D [auth B]	1,203	Saccharomyces cerevisiae	Mutation(s): 0  Gene Names: RPA135, RPA2, RRN2, SRP3, YPR010C, YP9531.03C EC: 2.7.7.6
UniProt
Find proteins for P22138 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P22138  Go to UniProtKB:  P22138

Entity ID: 5
Molecule	Chains	Sequence Length	Organism	Details	Image
DNA-directed RNA polymerases I and III subunit RPAC1	E [auth C]	335	Saccharomyces cerevisiae	Mutation(s): 0  Gene Names: RPC40, RPA5, RPC5, YPR110C, P8283.18
UniProt
Find proteins for P07703 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P07703  Go to UniProtKB:  P07703

Entity ID: 6
Molecule	Chains	Sequence Length	Organism	Details	Image
DNA-directed RNA polymerase I subunit RPA14	F [auth D]	137	Saccharomyces cerevisiae	Mutation(s): 0  Gene Names: RPA14, YDR156W, YD8358.11
UniProt
Find proteins for P50106 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P50106  Go to UniProtKB:  P50106

Entity ID: 7
Molecule	Chains	Sequence Length	Organism	Details	Image
DNA-directed RNA polymerases I, II, and III subunit RPABC1	G [auth E]	215	Saccharomyces cerevisiae	Mutation(s): 0  Gene Names: RPB5, RPA7, RPC9, YBR154C, YBR1204
UniProt
Find proteins for P20434 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P20434  Go to UniProtKB:  P20434

Entity ID: 8
Molecule	Chains	Sequence Length	Organism	Details	Image
DNA-directed RNA polymerases I, II, and III subunit RPABC2	H [auth F]	155	Saccharomyces cerevisiae	Mutation(s): 0  Gene Names: RPO26, RPB6, YPR187W, P9677.8
UniProt
Find proteins for P20435 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P20435  Go to UniProtKB:  P20435

Entity ID: 9
Molecule	Chains	Sequence Length	Organism	Details	Image
DNA-directed RNA polymerase I subunit RPA43	I [auth G]	326	Saccharomyces cerevisiae	Mutation(s): 0  Gene Names: RPA43, RRN12, YOR340C, O6271
UniProt
Find proteins for P46669 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P46669  Go to UniProtKB:  P46669

Entity ID: 10
Molecule	Chains	Sequence Length	Organism	Details	Image
DNA-directed RNA polymerases I, II, and III subunit RPABC3	J [auth H]	146	Saccharomyces cerevisiae	Mutation(s): 0  Gene Names: RPB8, YOR224C, YOR50-14
UniProt
Find proteins for P20436 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P20436  Go to UniProtKB:  P20436

Entity ID: 11
Molecule	Chains	Sequence Length	Organism	Details	Image
DNA-directed RNA polymerase I subunit RPA12	K [auth I]	125	Saccharomyces cerevisiae	Mutation(s): 0  Gene Names: RPA12, RRN4, YJR063W, J1747
UniProt
Find proteins for P32529 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P32529  Go to UniProtKB:  P32529

Entity ID: 12
Molecule	Chains	Sequence Length	Organism	Details	Image
DNA-directed RNA polymerases I, II, and III subunit RPABC5	L [auth J]	70	Saccharomyces cerevisiae	Mutation(s): 0  Gene Names: RPB10, YOR210W
UniProt
Find proteins for P22139 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P22139  Go to UniProtKB:  P22139

Entity ID: 13
Molecule	Chains	Sequence Length	Organism	Details	Image
DNA-directed RNA polymerases I and III subunit RPAC2	M [auth K]	142	Saccharomyces cerevisiae	Mutation(s): 0  Gene Names: RPC19, YNL113W, N1937
UniProt
Find proteins for P28000 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P28000  Go to UniProtKB:  P28000

Entity ID: 14
Molecule	Chains	Sequence Length	Organism	Details	Image
DNA-directed RNA polymerases I, II, and III subunit RPABC4	N [auth L]	70	Saccharomyces cerevisiae	Mutation(s): 0  Gene Names: RPC10, RPB12, YHR143W-A, YHR143BW
UniProt
Find proteins for P40422 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P40422  Go to UniProtKB:  P40422

Entity ID: 15
Molecule	Chains	Sequence Length	Organism	Details	Image
DNA-directed RNA polymerase I subunit RPA49	O [auth M]	415	Saccharomyces cerevisiae	Mutation(s): 0  Gene Names: RPA49, RRN13, YNL248C, N0880
UniProt
Find proteins for Q01080 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore Q01080  Go to UniProtKB:  Q01080

Entity ID: 16
Molecule	Chains	Sequence Length	Organism	Details	Image
DNA-directed RNA polymerase I subunit RPA34	P [auth N]	233	Saccharomyces cerevisiae	Mutation(s): 0  Gene Names: RPA34, YJL148W, J0637
UniProt
Find proteins for P47006 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P47006  Go to UniProtKB:  P47006

Entity ID: 17
Molecule	Chains	Sequence Length	Organism	Details	Image
RNA polymerase I-specific transcription initiation factor RRN3	Q [auth O]	627	Saccharomyces cerevisiae	Mutation(s): 0  Gene Names: RRN3, YKL125W
UniProt
Find proteins for P36070 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P36070  Go to UniProtKB:  P36070

Entity ID: 1
Molecule	Chains	Length	Organism	Image
Template strand	A [auth T]	70	synthetic construct

Entity ID: 2
Molecule	Chains	Length	Organism	Image
Nontemplate strand	B [auth U]	70	synthetic construct

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
ZN	R [auth A], S [auth A], T [auth B], U [auth I], V [auth J], W [auth L]	ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: ELECTRON MICROSCOPY
• Resolution: 4.00 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

EM Software:

Task	Software Package	Version
RECONSTRUCTION	RELION

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2019-12-11 
Deposition Author(s): Mueller, C.W., Sadian, Y., Tafur, L.

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Funding Organization	Location	Grant Number
European Research Council		--

Revision History  

• Version 1.0: 2019-12-11
  Type: Initial release