6TTI
PKM2 in complex with Compound 6
- PDB DOI: https://doi.org/10.2210/pdb6TTI/pdb
- EM Map EMD-10577: EMDB EMDataResource
- Classification: CYTOSOLIC PROTEIN
- Organism(s): Homo sapiens
- Expression System: Escherichia coli
- Mutation(s): No 
- Deposited: 2019-12-27 Released: 2020-01-15 
Experimental Data Snapshot
- Method: ELECTRON MICROSCOPY
- Resolution: 2.50 Å
- Aggregation State: PARTICLE 
- Reconstruction Method: SINGLE PARTICLE 
wwPDB Validation   3D Report Full Report
This is version 1.2 of the entry. See complete history. 
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Pyruvate kinase PKM | 548 | Homo sapiens | Mutation(s): 0  Gene Names: PKM, OIP3, PK2, PK3, PKM2 EC: 2.7.1.40 | ||
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P14618 (Homo sapiens) Explore P14618  Go to UniProtKB:  P14618 | |||||
PHAROS:  P14618 GTEx:  ENSG00000067225  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P14618 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
Ligands 3 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
FBP Query on FBP | F [auth A], I [auth B], L [auth C], O [auth D] | 1,6-di-O-phosphono-beta-D-fructofuranose C6 H14 O12 P2 RNBGYGVWRKECFJ-ARQDHWQXSA-N | |||
NXE (Subject of Investigation/LOI) Query on NXE | E [auth A], H [auth B], K [auth C], N [auth D] | ~{N}-[3-(trifluoromethyl)-1,2-oxazol-5-yl]ethanamide C6 H5 F3 N2 O2 KKHMJANPVRFCAR-UHFFFAOYSA-N | |||
DMS Query on DMS | G [auth A], J [auth B], M [auth C], P [auth D] | DIMETHYL SULFOXIDE C2 H6 O S IAZDPXIOMUYVGZ-UHFFFAOYSA-N |
Experimental Data & Validation
Experimental Data
- Method: ELECTRON MICROSCOPY
- Resolution: 2.50 Å
- Aggregation State: PARTICLE 
- Reconstruction Method: SINGLE PARTICLE 
Task | Software Package | Version |
---|---|---|
RECONSTRUCTION | RELION | 3.04 |
Entry History 
Deposition Data
- Released Date: 2020-01-15  Deposition Author(s): Saur, M., Hartshorn, M.J., Dong, J., Reeks, J., Bunkoczi, G., Jhoti, H., Williams, P.A.
Revision History (Full details and data files)
- Version 1.0: 2020-01-15
Type: Initial release - Version 1.1: 2020-03-25
Changes: Database references - Version 1.2: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Data collection, Derived calculations, Structure summary