6USF

Deposited: 2019-10-26 Released: 2020-04-29
Deposition Author(s): Alvarez, F.J.D., Mukherjee, S., Han, S., Ammirati, M., Kossiakoff, A.A.

Experimental Data Snapshot

wwPDB Validation 3D Report Full Report

This is version 2.0 of the entry. See complete history.

Macromolecule Content

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
chimera of soluble cytochrome b562 (BRIL) and neuronal acetylcholine receptor subunit alpha-4	A, D	486	Homo sapiens, Escherichia coli	Mutation(s): 0 Gene Names: CHRNA4, NACRA4, cybC Membrane Entity: Yes
UniProt & NIH Common Fund Data Resources
Find proteins for P0ABE7 (Escherichia coli) Explore P0ABE7 Go to UniProtKB: P0ABE7
Find proteins for P43681 (Homo sapiens) Explore P43681 Go to UniProtKB: P43681
PHAROS: P43681 GTEx: ENSG00000101204
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Groups	P0ABE7P43681
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Neuronal acetylcholine receptor subunit beta-2	B, C, E	397	Homo sapiens	Mutation(s): 0 Gene Names: CHRNB2 Membrane Entity: Yes
UniProt & NIH Common Fund Data Resources
Find proteins for P17787 (Homo sapiens) Explore P17787 Go to UniProtKB: P17787
PHAROS: P17787 GTEx: ENSG00000160716
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P17787
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 3
Molecule	Chains	Sequence Length	Organism	Details	Image
Fab heavy chain	F [auth H], H [auth K]	229	Homo sapiens	Mutation(s): 0
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 4
Molecule	Chains	Sequence Length	Organism	Details	Image
Fab light chain	G [auth L], I [auth M]	215	Homo sapiens	Mutation(s): 0
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
Sequence Annotations Expand
Reference Sequence

Oligosaccharides

Entity ID: 5
Molecule	Chains	Length	2D Diagram	Glycosylation	3D Interactions
beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose	J [auth F], K [auth G]	2		N/A	Interactions Focus chain J [auth F] Focus chain K [auth G] Interactions & Density Focus chain J [auth F] Focus chain K [auth G]
Glycosylation Resources
GlyTouCan: G90333CG GlyCosmos: G90333CG GlyGen: G90333CG

Entity ID: 6
Molecule	Chains	Length	2D Diagram	Glycosylation	3D Interactions
2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose	L [auth I]	2		N/A	Interactions Focus chain L [auth I] Interactions & Density Focus chain L [auth I]
Glycosylation Resources
GlyTouCan: G42666HT GlyCosmos: G42666HT GlyGen: G42666HT

Small Molecules

Ligands 3 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
NAG Query on NAG Download Ideal Coordinates CCD File SDF format, chain M [auth A] SDF format, chain O [auth B] SDF format, chain P [auth C] SDF format, chain Q [auth D] MOL2 format, chain M [auth A] MOL2 format, chain O [auth B] MOL2 format, chain P [auth C] MOL2 format, chain Q [auth D]	M [auth A], O [auth B], P [auth C], Q [auth D]	2-acetamido-2-deoxy-beta-D-glucopyranose C₈ H₁₅ N O₆ OVRNDRQMDRJTHS-FMDGEEDCSA-N		Interactions Focus chain M [auth A] Focus chain O [auth B] Focus chain P [auth C] Focus chain Q [auth D] Interactions & Density Focus chain M [auth A] Focus chain O [auth B] Focus chain P [auth C] Focus chain Q [auth D]
QMR (Subject of Investigation/LOI) Query on QMR Download Ideal Coordinates CCD File SDF format, chain N [auth A] SDF format, chain R [auth D] MOL2 format, chain N [auth A] MOL2 format, chain R [auth D]	N [auth A], R [auth D]	VARENICLINE C₁₃ H₁₃ N₃ JQSHBVHOMNKWFT-DTORHVGOSA-N		Interactions Focus chain N [auth A] Focus chain R [auth D] Interactions & Density Focus chain N [auth A] Focus chain R [auth D]
BMA Query on BMA Download Ideal Coordinates CCD File SDF format, chain S [auth E] MOL2 format, chain S [auth E]	S [auth E]	beta-D-mannopyranose C₆ H₁₂ O₆ WQZGKKKJIJFFOK-RWOPYEJCSA-N		Interactions Focus chain S [auth E] Interactions & Density Focus chain S [auth E]

Experimental Data & Validation

EM Software:

Task	Software Package	Version
MODEL REFINEMENT	PHENIX	1.16-3549
RECONSTRUCTION	RELION	3.0-beta

Entry History

Deposition Author(s):

Alvarez, F.J.D.

Version 1.0: 2020-04-29
Type: Initial release
Version 1.1: 2020-05-06
Changes: Database references
Version 2.0: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Advisory, Atomic model, Data collection, Derived calculations, Structure summary