6JER

Apo crystal structure of class I type a peptide deformylase from Acinetobacter baumannii


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.289 
  • R-Value Work: 0.221 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Expression, crystallization, and preliminary X-ray crystallographic analysis of peptide deformylase from Acinetobacter baumanii

Kang, L.W.

(2017) Biodesign 5: 49-52


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Peptide deformylase
A, B
170Acinetobacter baumannii MRSN 3527Mutation(s): 0 
Gene Names: def_1 (def)
EC: 3.5.1.88
Find proteins for A0A0J1A8B1 (Acinetobacter baumannii MRSN 3527)
Go to UniProtKB:  A0A0J1A8B1
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
ZN
Query on ZN

Download SDF File 
Download CCD File 
A, B
ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.289 
  • R-Value Work: 0.221 
  • Space Group: P 32
Unit Cell:
Length (Å)Angle (°)
a = 39.425α = 90.00
b = 39.425β = 90.00
c = 187.888γ = 120.00
Software Package:
Software NamePurpose
HKL-2000data scaling
MOLREPphasing
REFMACrefinement
HKL-2000data collection
HKL-2000data reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2020-02-12
    Type: Initial release