6ZIV

Crystal structure of a Beta-glucosidase from Alicyclobacillus acidiphilus


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.95 Å
  • R-Value Free: 0.296 
  • R-Value Work: 0.262 

wwPDB Validation 3D Report Full Report



Literature

Producing natural vanilla extract from green vanilla beans using a B-glucosidase from Alicyclobacillus acidiphilus

Delgado, L.Heckmann, C.M.De Benedetti, S.Nardini, M.Gourlay, L.J.Paradisi, F.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Beta-glucosidaseAAA, BBB, CCC, DDD, EEE, FFF, GGG, HHH477Alicyclobacillus tengchongensisMutation(s): 0 
Gene Names: SD51_06195
EC: 3.2.1.21
Protein Feature View
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  • Reference Sequence
Small Molecules
Ligands 4 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
B3P
Query on B3P

Download CCD File 
AAA, BBB, CCC, DDD, EEE, FFF, GGG, HHH
2-[3-(2-HYDROXY-1,1-DIHYDROXYMETHYL-ETHYLAMINO)-PROPYLAMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
C11 H26 N2 O6
HHKZCCWKTZRCCL-UHFFFAOYSA-N
 Ligand Interaction
IOD
Query on IOD

Download CCD File 
CCC
IODIDE ION
I
XMBWDFGMSWQBCA-UHFFFAOYSA-M
 Ligand Interaction
EDO
Query on EDO

Download CCD File 
AAA, BBB, FFF, GGG
1,2-ETHANEDIOL
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
 Ligand Interaction
NA
Query on NA

Download CCD File 
AAA, CCC, EEE, FFF, GGG
SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.95 Å
  • R-Value Free: 0.296 
  • R-Value Work: 0.262 
  • Space Group: P 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 62.654α = 91.616
b = 91.644β = 90.422
c = 159.342γ = 89.988
Software Package:
Software NamePurpose
REFMACrefinement
XDSdata reduction
STARANISOdata scaling
BALBESphasing

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

  • Deposited Date: 2020-06-26 
  • Released Date: 2020-07-29 
  • Deposition Author(s): Gourlay, L.J.

Revision History 

  • Version 1.0: 2020-07-29
    Type: Initial release