7D6X

Mycobacterium smegmatis Sdh1 complex in the apo form


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.88 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

Mycobacterium smegmatis Sdh1 complex in the apo form

Zhou, X.Gao, Y.Wang, Q.Gong, H.Rao, Z.

(2021) Proc Natl Acad Sci U S A 


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Succinate dehydrogenase subunit A A635Mycolicibacterium smegmatisMutation(s): 0 
Gene Names: frdAERS451418_00392
EC: 1.3
Find proteins for A0A0D6G5S3 (Mycolicibacterium smegmatis)
Explore A0A0D6G5S3 
Go to UniProtKB:  A0A0D6G5S3
Protein Feature View
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  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetailsImage
Fumarate reductase iron-sulfur subunit B249Mycolicibacterium smegmatisMutation(s): 0 
Gene Names: frdBERS451418_00391
Find proteins for A0A0D6G6K3 (Mycolicibacterium smegmatis)
Explore A0A0D6G6K3 
Go to UniProtKB:  A0A0D6G6K3
Protein Feature View
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  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 3
MoleculeChainsSequence LengthOrganismDetailsImage
Succinate dehydrogenase (Membrane anchor subunit) C283Mycolicibacterium smegmatisMutation(s): 0 
Gene Names: ERS451418_00393
Find proteins for A0A0D6G6P6 (Mycolicibacterium smegmatis)
Explore A0A0D6G6P6 
Go to UniProtKB:  A0A0D6G6P6
Protein Feature View
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  • Reference Sequence
Small Molecules
Ligands 5 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
FAD
Query on FAD

Download Ideal Coordinates CCD File 
A
FLAVIN-ADENINE DINUCLEOTIDE
C27 H33 N9 O15 P2
VWWQXMAJTJZDQX-UYBVJOGSSA-N
 Ligand Interaction
PEV
Query on PEV

Download Ideal Coordinates CCD File 
C
(1S)-2-{[(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL STEARATE
C39 H78 N O8 P
RPJZYOHZALDGKI-QNGWXLTQSA-N
 Ligand Interaction
SF4
Query on SF4

Download Ideal Coordinates CCD File 
B
IRON/SULFUR CLUSTER
Fe4 S4
LJBDFODJNLIPKO-VKOJMFJBAC
 Ligand Interaction
F3S
Query on F3S

Download Ideal Coordinates CCD File 
B
FE3-S4 CLUSTER
Fe3 S4
FCXHZBQOKRZXKS-MZMDZPPWAW
 Ligand Interaction
FES
Query on FES

Download Ideal Coordinates CCD File 
B, C
FE2/S2 (INORGANIC) CLUSTER
Fe2 S2
NIXDOXVAJZFRNF-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.88 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Chinese Academy of SciencesChinaXDB37030201, XDB37020203
National Natural Science Foundation of China (NSFC)China81520108019, 813300237
Chinese Academy of SciencesChina2017YFC0840300

Revision History  (Full details and data files)

  • Version 1.0: 2021-04-07
    Type: Initial release