7AIH

The Large subunit of the Kinetoplastid mitochondrial ribosome


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
HA [auth BI]SCOP2 FamilyCyclophilin peptidylprolyl isomerase-like8103167 4000390 SCOP2 (2022-06-29)
HA [auth BI]SCOP2 SuperfamilyCyclophilin-like8103168 3000168 SCOP2 (2022-06-29)
UA [auth BH]SCOP2 FamilyCyclophilin peptidylprolyl isomerase-like8103169 4000390 SCOP2 (2022-06-29)
UA [auth BH]SCOP2 SuperfamilyCyclophilin-like8103170 3000168 SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
FRibosomal_L13e7aihF1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal protein L13 and L16-A (From Topology)T: Ribosomal protein L13 and L16-AF: Ribosomal_L13ECOD (1.6)
URibosomal_L33e7aihU1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Ribosomal_L33ECOD (1.6)
WF_UNCLASSIFIEDe7aihW1 A: few secondary structure elementsX: Ribosomal protein L36 (From Topology)H: Ribosomal protein L36 (From Topology)T: Ribosomal protein L36F: F_UNCLASSIFIEDECOD (1.6)
NB [auth BO]Ribosomal_L14e7aihBO1 A: beta barrelsX: Ribosomal protein L14-likeH: Ribosomal protein L14-related (From Topology)T: Ribosomal protein L14-relatedF: Ribosomal_L14ECOD (1.6)
QRibosomal_L28_1,Methyltransf_5_2nde7aihQ1 A: few secondary structure elementsX: Ribosomal protein bL28-related (From Homology)H: Ribosomal protein bL28-relatedT: Mitoribosomal protein bL28mF: Ribosomal_L28_1,Methyltransf_5_2ndECOD (1.6)
TF_UNCLASSIFIEDe7aihT1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: F_UNCLASSIFIEDECOD (1.6)
AA [auth BA]F_UNCLASSIFIEDe7aihBA1 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Flavoproteins/Phosphotyrosine protein phosphatases-likeT: Rhodanese/Cell cycle control phosphataseF: F_UNCLASSIFIEDECOD (1.6)
HA [auth BI]Pro_isomerasee7aihBI1 A: beta barrelsX: Cyclophilin-like (From Topology)H: Cyclophilin-like (From Topology)T: Cyclophilin-likeF: Pro_isomeraseECOD (1.6)
MA [auth Ai]AMP-binding_3rde7aihAi2 A: beta barrelsX: beta-barrel domain in acetyl-CoA synthetase-like proteins (From Topology)H: beta-barrel domain in acetyl-CoA synthetase-like proteins (From Topology)T: beta-barrel domain in acetyl-CoA synthetase-like proteinsF: AMP-binding_3rdECOD (1.6)
MA [auth Ai]AMP-binding_1ste7aihAi3 A: a/b three-layered sandwichesX: Rossmann-like domain in Acetyl-CoA synthetase-like proteins (From Topology)H: Rossmann-like domain in Acetyl-CoA synthetase-like proteins (From Topology)T: Rossmann-like domain in Acetyl-CoA synthetase-like proteinsF: AMP-binding_1stECOD (1.6)
MA [auth Ai]AMP-binding_2nde7aihAi1 A: a/b three-layered sandwichesX: Rossmann-like domain in Acetyl-CoA synthetase-like proteins (From Topology)H: Rossmann-like domain in Acetyl-CoA synthetase-like proteins (From Topology)T: Rossmann-like domain in Acetyl-CoA synthetase-like proteinsF: AMP-binding_2ndECOD (1.6)
UA [auth BH]Pro_isomerasee7aihBH1 A: beta barrelsX: Cyclophilin-like (From Topology)H: Cyclophilin-like (From Topology)T: Cyclophilin-likeF: Pro_isomeraseECOD (1.6)
VA [auth Am]PPR_longe7aihAm1 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: PPR_longECOD (1.6)
YA [auth Ak]Hydrolase_4_1e7aihAk1 A: a/b three-layered sandwichesX: alpha/beta-Hydrolases (From Topology)H: alpha/beta-Hydrolases (From Topology)T: alpha/beta-HydrolasesF: Hydrolase_4_1ECOD (1.6)
AB [auth Ad]Img2e7aihAd1 A: a+b two layersX: Glucose permease domain IIB-likeH: eIF1-like (From Topology)T: eIF1-likeF: Img2ECOD (1.6)
EB [auth As]F_UNCLASSIFIEDe7aihAs1 A: alpha arraysX: HhH/H2THH: SAM/DNA-glycosylaseT: SAM domain-likeF: F_UNCLASSIFIEDECOD (1.6)
GB [auth Ac]MRP-L46e7aihAc1 A: a+b two layersX: beta-GraspH: Nudix (From Topology)T: NudixF: MRP-L46ECOD (1.6)
OB [auth BG]F_UNCLASSIFIEDe7aihBG1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: F_UNCLASSIFIEDECOD (1.6)
HRibosomal_L16e7aihH1 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Ribosomal protein L10eF: Ribosomal_L16ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF00297Ribosomal protein L3 (Ribosomal_L3)Ribosomal protein L3- Family
PF00572Ribosomal protein L13 (Ribosomal_L13)Ribosomal protein L13- Family
PF01196Ribosomal protein L17 (Ribosomal_L17)Ribosomal protein L17- Family
NB [auth BO]PF00238Ribosomal protein L14p/L23e (Ribosomal_L14)Ribosomal protein L14p/L23e- Domain
PF00829Ribosomal prokaryotic L21 protein (Ribosomal_L21p)Ribosomal prokaryotic L21 protein- Family
PF00237Ribosomal protein L22p/L17e (Ribosomal_L22)Ribosomal protein L22p/L17eThis family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes.Domain
PF06984Mitochondrial 39-S ribosomal protein L47 (MRP-L47) (MRP-L47)Mitochondrial 39-S ribosomal protein L47 (MRP-L47)- Family
PF00573Ribosomal protein L4/L1 family (Ribosomal_L4)Ribosomal protein L4/L1 family- Family
PF01281Ribosomal protein L9, N-terminal domain (Ribosomal_L9_N)Ribosomal protein L9, N-terminal domain- Domain
HA [auth BI]PF00160Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD (Pro_isomerase)Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLDThe peptidyl-prolyl cis-trans isomerases, also known as cyclophilins, share this domain of about 109 amino acids. Cyclophilins have been found in all organisms studied so far and catalyse peptidyl-prolyl isomerisation during which the peptide bond pr ...The peptidyl-prolyl cis-trans isomerases, also known as cyclophilins, share this domain of about 109 amino acids. Cyclophilins have been found in all organisms studied so far and catalyse peptidyl-prolyl isomerisation during which the peptide bond preceding proline (the peptidyl-prolyl bond) is stabilised in the cis conformation. Mammalian cyclophilin A (CypA) is a major cellular target for the immunosuppressive drug cyclosporin A (CsA). Other roles for cyclophilins may include chaperone and cell signalling function [1].
Domain
LA [auth Ab]PF05047Mitochondrial ribosomal protein L51 / S25 / CI-B8 domain (L51_S25_CI-B8)Mitochondrial ribosomal protein L51 / S25 / CI-B8 domainThe proteins in this family are located in the mitochondrion. The family includes ribosomal protein L51, and S25. This family also includes mitochondrial NADH-ubiquinone oxidoreductase B8 subunit (CI-B8) EC:1.6.5.3. It is not known whether all member ...The proteins in this family are located in the mitochondrion. The family includes ribosomal protein L51, and S25. This family also includes mitochondrial NADH-ubiquinone oxidoreductase B8 subunit (CI-B8) EC:1.6.5.3. It is not known whether all members of this family form part of the NADH-ubiquinone oxidoreductase and whether they are also all ribosomal proteins. Structurally related to thioredoxin-fold.
Domain
MA [auth Ai]PF00501AMP-binding enzyme (AMP-binding)AMP-binding enzyme- Family
UA [auth BH]PF00160Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD (Pro_isomerase)Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLDThe peptidyl-prolyl cis-trans isomerases, also known as cyclophilins, share this domain of about 109 amino acids. Cyclophilins have been found in all organisms studied so far and catalyse peptidyl-prolyl isomerisation during which the peptide bond pr ...The peptidyl-prolyl cis-trans isomerases, also known as cyclophilins, share this domain of about 109 amino acids. Cyclophilins have been found in all organisms studied so far and catalyse peptidyl-prolyl isomerisation during which the peptide bond preceding proline (the peptidyl-prolyl bond) is stabilised in the cis conformation. Mammalian cyclophilin A (CypA) is a major cellular target for the immunosuppressive drug cyclosporin A (CsA). Other roles for cyclophilins may include chaperone and cell signalling function [1].
Domain
VA [auth Am]PF13041PPR repeat family (PPR_2)PPR repeat family- Repeat
PF03946Ribosomal protein L11, N-terminal domain (Ribosomal_L11_N)Ribosomal protein L11, N-terminal domainThe N-terminal domain of Ribosomal protein L11 adopts an alpha/beta fold and is followed by the RNA binding C-terminal domain.Domain
PF00298Ribosomal protein L11, RNA binding domain (Ribosomal_L11)Ribosomal protein L11, RNA binding domain- Domain
GB [auth Ac]PF1178839S mitochondrial ribosomal protein L46 (MRP-L46)39S mitochondrial ribosomal protein L46- Family
LB [auth Ax]PF00412LIM domain (LIM)LIM domainThis family represents two copies of the LIM structural domain.Domain
MB [auth BL]PF03947Ribosomal Proteins L2, C-terminal domain (Ribosomal_L2_C)Ribosomal Proteins L2, C-terminal domain- Domain
PF00828Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A (Ribosomal_L27A)Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A- Family
PF00252Ribosomal protein L16p/L10e (Ribosomal_L16)Ribosomal protein L16p/L10e- Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Ribosomal protein L3-like protein
50S ribosomal protein L13-like protein
Putative 50S ribosomal protein L17
uL23m
bL33m- -
bL36m- - -
BA [auth UA]UA---
CA [auth BB]mL95- - -
KA [auth BC]mL96- - -
OA [auth Au]mL87- - -
QA [auth Ao]mL79- - -
BB [auth BF]mL99- - -
IB [auth BD]mL97- -
KB [auth Ag]mL54/69- - -
NB [auth BO]Putative ribosomal protein L14
PB [auth UB]UB---
bL19m- -
bL20
bL21m
uL22m
uL24m
bL27m- -
bL28m -
uL29m
uL30m- -
uL4m
bL32m- -
bL35m- - -
mL38- - -
mL40- -
mL41- - -
AA [auth BA]mL94- - -
RIBOSOMAL_L9 domain-containing protein- -
DA [auth Aw]mL89- - -
EA [auth Bj]bL31m- - -
FA [auth An]mL76- - -
GA [auth Al]mL74- - -
HA [auth BI]Peptidyl-prolyl cis-trans isomerase
IA [auth Az]mL93- - -
JA [auth At]mL86- -
LA [auth Ab]L51_S25_CI-B8 domain-containing protein
MA [auth Ai]mL69 -
uL10m- - -
NA [auth Ap]mL80- - -
PA [auth Aa]mL42- - -
RA [auth BM]mL70- -
SA [auth Ar]mL84- - -
TA [auth Aj]mL72- - -
UA [auth BH]Peptidyl-prolyl cis-trans isomerase
VA [auth Am]mL75 -
WA [auth Aq]mL82- - -
Putative ribosomal protein L11
XA [auth BE]mL98- -
YA [auth Ak]mL73- -
ZA [auth BP]mL52,mL52- - -
AB [auth Ad]mL49- - -
CB [auth Av]mL88- - -
DB [auth Af]mL63- - -
EB [auth As]mL85- - -
FB [auth Ae]mL53- - -
GB [auth Ac]MRP-L46 domain-containing protein -
HB [auth Ah]mL68- - -
JB [auth Ay]C2H2-type domain-containing protein- - -
LB [auth Ax]LIM zinc-binding domain-containing protein - -
MB [auth BL]Putative ribosomal protein L2
OB [auth BG]mL100- - -
QB [auth UC]UC---
Ribosomal_L18e/L15P domain-containing protein
RB [auth UD]UD---
SB [auth 1]Ribosomal RNA---
Ribosomal_L16 domain-containing protein

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR019927Large ribosomal subunit protein uL3, bacterial/organelle-typeFamily
IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
IPR000597Large ribosomal subunit protein uL3Family
IPR005822Large ribosomal subunit protein uL13Family
IPR036899Large ribosomal subunit protein uL13 superfamilyHomologous Superfamily
IPR036373Large ribosomal subunit protein bL17 superfamilyHomologous Superfamily
IPR000456Large ribosomal subunit protein bL17Family
IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
IPR013025Large ribosomal subunit protein uL23-likeFamily
IPR038584Large ribosomal subunit protein bL33 superfamilyHomologous Superfamily
NB [auth BO]IPR036853Large ribosomal subunit protein uL14 superfamilyHomologous Superfamily
NB [auth BO]IPR000218Large ribosomal subunit protein uL14Family
IPR035566Ribosomal protein bL20, C-terminalHomologous Superfamily
IPR005813Large ribosomal subunit protein bL20Family
IPR028909Large ribosomal subunit protein bL21-likeFamily
IPR001787Large ribosomal subunit protein bL21Family
IPR036164Large ribosomal subunit protein bL21-like superfamilyHomologous Superfamily
IPR047867Large ribosomal subunit protein uL22, bacterial/organelle-typeFamily
IPR036394Ribosomal protein uL22 superfamilyHomologous Superfamily
IPR001063Large ribosomal subunit protein uL22Family
IPR003256Large ribosomal subunit protein uL24Family
IPR041988Large ribosomal subunit protein uL24, KOW domainDomain
IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
IPR005825Large ribosomal subunit protein uL24, conserved siteConserved Site
IPR026569Large ribosomal subunit protein bL28Family
IPR038340MRP-L47 superfamily, mitochondrialHomologous Superfamily
IPR010729Large ribosomal subunit protein uL29m, mitochondrialFamily
IPR036919Large ribosomal subunit protein uL30, ferredoxin-like fold domain superfamilyHomologous Superfamily
IPR013005Large ribosomal subunit protein uL4-likeFamily
IPR002136Large ribosomal subunit protein uL4Family
IPR023574Large ribosomal subunit protein uL4 domain superfamilyHomologous Superfamily
IPR036610PEBP-like superfamilyHomologous Superfamily
IPR035810Phosphatidylethanolamine-binding protein, eukaryoticFamily
IPR020070Large ribosomal subunit protein bL9, N-terminalDomain
HA [auth BI]IPR029000Cyclophilin-like domain superfamilyHomologous Superfamily
HA [auth BI]IPR002130Cyclophilin-type peptidyl-prolyl cis-trans isomerase domainDomain
LA [auth Ab]IPR007741Ribosomal protein/NADH dehydrogenase domainDomain
LA [auth Ab]IPR036249Thioredoxin-like superfamilyHomologous Superfamily
LA [auth Ab]IPR039927Large ribosomal subunit protein mL43Family
MA [auth Ai]IPR000873AMP-dependent synthetase/ligase domainDomain
TA [auth Aj]IPR011990Tetratricopeptide-like helical domain superfamilyHomologous Superfamily
UA [auth BH]IPR029000Cyclophilin-like domain superfamilyHomologous Superfamily
UA [auth BH]IPR002130Cyclophilin-type peptidyl-prolyl cis-trans isomerase domainDomain
UA [auth BH]IPR020892Cyclophilin-type peptidyl-prolyl cis-trans isomerase, conserved siteConserved Site
VA [auth Am]IPR011990Tetratricopeptide-like helical domain superfamilyHomologous Superfamily
VA [auth Am]IPR002885Pentatricopeptide repeatRepeat
IPR020783Large ribosomal subunit protein uL11, C-terminalDomain
IPR000911Ribosomal protein uL11Family
IPR036769Large ribosomal subunit protein uL11, C-terminal domain superfamilyHomologous Superfamily
IPR020784Large ribosomal subunit protein uL11, N-terminalDomain
IPR036796Large ribosomal subunit protein uL11, N-terminal domain superfamilyHomologous Superfamily
YA [auth Ak]IPR029058Alpha/Beta hydrolase foldHomologous Superfamily
GB [auth Ac]IPR021757Large ribosomal subunit protein mL46, N-terminalDomain
GB [auth Ac]IPR040008Large ribosomal subunit protein mL46Family
JB [auth Ay]IPR013087Zinc finger C2H2-typeDomain
JB [auth Ay]IPR036236Zinc finger C2H2 superfamilyHomologous Superfamily
LB [auth Ax]IPR001781Zinc finger, LIM-typeDomain
MB [auth BL]IPR022669Large ribosomal subunit protein uL2, C-terminalDomain
MB [auth BL]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
MB [auth BL]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
MB [auth BL]IPR002171Large ribosomal subunit protein uL2Family
IPR005749Large ribosomal subunit protein uL15, bacterial-typeFamily
IPR021131Large ribosomal subunit protein uL15/eL18Domain
IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
IPR036920Large ribosomal subunit protein uL16 superfamilyHomologous Superfamily
IPR000114Large ribosomal subunit protein uL16, bacterial-typeFamily
IPR016180Large ribosomal subunit protein uL16 domainDomain
IPR047873Large ribosomal subunit protein uL16Family