Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2B SuperfamilyRap30/74 heterodimerisation domain-like8054050 3000142 SCOP2B (2022-06-29)
T [auth d]SCOP2B SuperfamilyCore histone-like8042407 3001387 SCOP2B (2022-06-29)
C [auth D]SCOP2B SuperfamilyCore histone-like8042407 3001387 SCOP2B (2022-06-29)
D [auth E]SCOP2B SuperfamilyTaf5 N-terminal domain-like8034920 3001495 SCOP2B (2022-06-29)
U [auth e]SCOP2B SuperfamilyTaf5 N-terminal domain-like8034920 3001495 SCOP2B (2022-06-29)
E [auth F]SCOP2B SuperfamilyCore histone-like8081687 3001387 SCOP2B (2022-06-29)
V [auth f]SCOP2B SuperfamilyCore histone-like8081687 3001387 SCOP2B (2022-06-29)
F [auth G]SCOP2B SuperfamilyRap30/74 heterodimerisation domain-like8054049 3000142 SCOP2B (2022-06-29)
G [auth H]SCOP2B SuperfamilyCore histone-like8053232 3001387 SCOP2B (2022-06-29)
I [auth J]SCOP2B SuperfamilyCore histone-like8053233 3001387 SCOP2B (2022-06-29)
X [auth j]SCOP2B SuperfamilyCore histone-like8053233 3001387 SCOP2B (2022-06-29)
J [auth L]SCOP2B SuperfamilyCore histone-like8042408 3001387 SCOP2B (2022-06-29)
Z [auth l]SCOP2B SuperfamilyCore histone-like8042408 3001387 SCOP2B (2022-06-29)
K [auth O]SCOP2B SuperfamilyTranscription factor IIA (TFIIA) beta-barrel domain8037007 3001281 SCOP2B (2022-06-29)
K [auth O]SCOP2B SuperfamilyTranscription factor IIA (TFIIA) alpha-helical domain8037005 3001887 SCOP2B (2022-06-29)
M [auth Q]SCOP2B SuperfamilyTranscription factor IIA (TFIIA) beta-barrel domain8037002 3001281 SCOP2B (2022-06-29)
M [auth Q]SCOP2B SuperfamilyTranscription factor IIA (TFIIA) alpha-helical domain8037001 3001887 SCOP2B (2022-06-29)
N [auth R]SCOP2B SuperfamilyCyclin-like8043880 3000768 SCOP2B (2022-06-29)
N [auth R]SCOP2B SuperfamilyCyclin-like8043882 3000768 SCOP2B (2022-06-29)
P [auth T]SCOP2B SuperfamilyRap30/74 heterodimerisation domain-like8003550 3000142 SCOP2B (2022-06-29)
P [auth T]SCOP2B SuperfamilyWinged helix DNA-binding domain8003005 3000034 SCOP2B (2022-06-29)
S [auth c]SCOP2B SuperfamilyCore histone-like8086844 3001387 SCOP2B (2022-06-29)
Y [auth k]SCOP2B SuperfamilyCore histone-like8036824 3001387 SCOP2B (2022-06-29)
AA [auth m]SCOP2B SuperfamilyCore histone-like8036818 3001387 SCOP2B (2022-06-29)
EA [auth r]SCOP2B SuperfamilyHRDC-like8101241 3000132 SCOP2B (2022-06-29)
GA [auth t]SCOP2B SuperfamilyRPB6/omega subunit-like8106082 3000189 SCOP2B (2022-06-29)
KA [auth x]SCOP2B SuperfamilyRNA polymerase subunit RPB108101287 3001213 SCOP2B (2022-06-29)
LA [auth y]SCOP2B SuperfamilyRBP11-like subunits of RNA polymerase8080728 3001655 SCOP2B (2022-06-29)
MA [auth z]SCOP2B SuperfamilyRNA polymerase subunits8103068 3001823 SCOP2B (2022-06-29)
L [auth P]SCOP2B SuperfamilyTATA-box binding protein-like8036295 3000705 SCOP2B (2022-06-29)
L [auth P]SCOP2B SuperfamilyTATA-box binding protein-like8036293 3000705 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
BF_UNCLASSIFIEDe7eg8B1 A: beta sandwichesX: Baculovirus p35 protein-related (From Topology)H: Baculovirus p35 protein-related (From Topology)T: Baculovirus p35 protein-relatedF: F_UNCLASSIFIEDECOD (1.6)
BF_UNCLASSIFIEDe7eg8B3 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: F_UNCLASSIFIEDECOD (1.6)
BF_UNCLASSIFIEDe7eg8B2 A: mixed a+b and a/bX: Zincin-likeH: Metalloproteases (zincins) catalytic domain (From Topology)T: Metalloproteases (zincins) catalytic domainF: F_UNCLASSIFIEDECOD (1.6)
D [auth E]PF00400e7eg8E2 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 8-bladedF: PF00400ECOD (1.6)
D [auth E]PF04494e7eg8E1 A: alpha superhelicesX: Taf5 N-terminal domain-like (From Topology)H: Taf5 N-terminal domain-like (From Topology)T: Taf5 N-terminal domain-likeF: PF04494ECOD (1.6)
U [auth e]PF00400e7eg8e1 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 8-bladedF: PF00400ECOD (1.6)
U [auth e]PF04494e7eg8e2 A: alpha superhelicesX: Taf5 N-terminal domain-like (From Topology)H: Taf5 N-terminal domain-like (From Topology)T: Taf5 N-terminal domain-likeF: PF04494ECOD (1.6)
I [auth J]PF03540e7eg8J1 A: alpha arraysX: Histone-likeH: Histone-relatedT: HistoneF: PF03540ECOD (1.6)
X [auth j]PF03540e7eg8j1 A: alpha arraysX: Histone-likeH: Histone-relatedT: HistoneF: PF03540ECOD (1.6)
J [auth L]PF03847e7eg8L1 A: alpha arraysX: Histone-likeH: Histone-relatedT: HistoneF: PF03847ECOD (1.6)
K [auth O]PF02751e7eg8O1 A: beta duplicates or obligate multimersX: Transcription factor IIA (TFIIA), beta-barrel domain (From Topology)H: Transcription factor IIA (TFIIA), beta-barrel domain (From Topology)T: Transcription factor IIA (TFIIA), beta-barrel domainF: PF02751ECOD (1.6)
K [auth O]PF02268e7eg8O2 A: alpha duplicates or obligate multimersX: TFIIA, alpha-helical domain (From Topology)H: TFIIA, alpha-helical domain (From Topology)T: TFIIA, alpha-helical domainF: PF02268ECOD (1.6)
M [auth Q]PF03153e7eg8Q2 A: beta duplicates or obligate multimersX: Transcription factor IIA (TFIIA), beta-barrel domain (From Topology)H: Transcription factor IIA (TFIIA), beta-barrel domain (From Topology)T: Transcription factor IIA (TFIIA), beta-barrel domainF: PF03153ECOD (1.6)
M [auth Q]PF03153e7eg8Q1 A: alpha duplicates or obligate multimersX: TFIIA, alpha-helical domain (From Topology)H: TFIIA, alpha-helical domain (From Topology)T: TFIIA, alpha-helical domainF: PF03153ECOD (1.6)
N [auth R]PF00382e7eg8R1 A: alpha arraysX: HTHH: HTHT: Cyclin-likeF: PF00382ECOD (1.6)
N [auth R]PF08271e7eg8R2 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: PF08271ECOD (1.6)
O [auth S]PF05793e7eg8S1 A: beta complex topologyX: triple barrel (From Homology)H: triple barrelT: Rap30/74 interaction domains-likeF: PF05793ECOD (1.6)
Y [auth k]PF04719e7eg8k1 A: alpha arraysX: Histone-likeH: Histone-relatedT: HistoneF: PF04719ECOD (1.6)
BA [auth o]PF00623e7eg8o3 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: double psiF: PF00623ECOD (1.6)
BA [auth o]PF00623e7eg8o2 A: a+b two layersX: MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase (From Topology)H: MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase (From Topology)T: MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymeraseF: PF00623ECOD (1.6)
BA [auth o]PF04990e7eg8o9 A: a+b two layersX: permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit (From Topology)H: permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit (From Topology)T: permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunitF: PF04990ECOD (1.6)
BA [auth o]PF04998e7eg8o1 A: a+b two layersX: ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit (From Topology)H: ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit (From Topology)T: ferredoxin-like domain in yeast RNA-polymerase beta-prime subunitF: PF04998ECOD (1.6)
BA [auth o]PF04997e7eg8o7 A: a+b complex topologyX: N-terminal domain in RNA-polymerase beta-prime subunit (From Topology)H: N-terminal domain in RNA-polymerase beta-prime subunit (From Topology)T: N-terminal domain in RNA-polymerase beta-prime subunitF: PF04997ECOD (1.6)
BA [auth o]PF04998e7eg8o8 A: a+b complex topologyX: central helical domain in RNA-polymerase beta-prime subunit (From Topology)H: central helical domain in RNA-polymerase beta-prime subunit (From Topology)T: central helical domain in RNA-polymerase beta-prime subunitF: PF04998ECOD (1.6)
BA [auth o]PF04992e7eg8o5 A: a+b complex topologyX: helical domain in yeast RNA-polymerasesH: third helical domain in yeast RNA-polymerase II beta-prime subunit (From Topology)T: third helical domain in yeast RNA-polymerase II beta-prime subunitF: PF04992ECOD (1.6)
BA [auth o]PF04998,PF05000e7eg8o6 A: a+b complex topologyX: second helical domain in RNA-polymerase beta-prime subunit (From Topology)H: second helical domain in RNA-polymerase beta-prime subunit (From Topology)T: second helical domain in RNA-polymerase beta-prime subunitF: PF04998,PF05000ECOD (1.6)
BA [auth o]PF04983e7eg8o4 A: a+b complex topologyX: first helical domain in RNA-polymerase beta-prime subunit (From Topology)H: first helical domain in RNA-polymerase beta-prime subunit (From Topology)T: first helical domain in RNA-polymerase beta-prime subunitF: PF04983ECOD (1.6)
CA [auth p]PF00562e7eg8p6 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: double psiF: PF00562ECOD (1.6)
CA [auth p]PF00562e7eg8p4 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Single hybrid motifF: PF00562ECOD (1.6)
CA [auth p]PF04563,PF04565e7eg8p7 A: a+b complex topologyX: N-terminal domain in beta subunit of DNA dependent RNA-polymerase (From Topology)H: N-terminal domain in beta subunit of DNA dependent RNA-polymerase (From Topology)T: N-terminal domain in beta subunit of DNA dependent RNA-polymeraseF: PF04563,PF04565ECOD (1.6)
CA [auth p]PF04561e7eg8p2 A: a+b complex topologyX: insertion domain in beta subunit of DNA dependent RNA-polymerase (From Topology)H: insertion domain in beta subunit of DNA dependent RNA-polymerase (From Topology)T: insertion domain in beta subunit of DNA dependent RNA-polymeraseF: PF04561ECOD (1.6)
CA [auth p]PF00562,PF04567e7eg8p3 A: a+b complex topologyX: barrel domain in beta subunit of DNA dependent RNA-polymerase (From Topology)H: barrel domain in beta subunit of DNA dependent RNA-polymerase (From Topology)T: barrel domain in beta subunit of DNA dependent RNA-polymeraseF: PF00562,PF04567ECOD (1.6)
CA [auth p]PF00562,PF04560e7eg8p5 A: a+b complex topologyX: C-terminal domain in beta subunit of DNA dependent RNA-polymerase (From Topology)H: C-terminal domain in beta subunit of DNA dependent RNA-polymerase (From Topology)T: C-terminal domain in beta subunit of DNA dependent RNA-polymeraseF: PF00562,PF04560ECOD (1.6)
CA [auth p]PF04566e7eg8p1 A: a+b complex topologyX: inserted a+b domain in yeast RNA polymerase beta subunit (From Topology)H: inserted a+b domain in yeast RNA polymerase beta subunit (From Topology)T: inserted a+b domain in yeast RNA polymerase beta subunitF: PF04566ECOD (1.6)
DA [auth q]PF01193e7eg8q1 A: a+b two layersX: DCoH-likeH: RBP11-like subunits of RNA polymerase (From Topology)T: RBP11-like subunits of RNA polymeraseF: PF01193ECOD (1.6)
DA [auth q]PF01000e7eg8q2 A: a+b complex topologyX: Ribosomal protein TL5/L25 C-terminal domain-likeH: Insert subdomain of RNA polymerase alpha subunit (From Topology)T: Insert subdomain of RNA polymerase alpha subunitF: PF01000ECOD (1.6)
EA [auth r]PF03874e7eg8r1 A: alpha arraysX: HhH/H2THH: SAM/DNA-glycosylaseT: SAM domain-likeF: PF03874ECOD (1.6)
FA [auth s]PF01191e7eg8s2 A: a+b two layersX: RPB5-like RNA polymerase subunit (From Topology)H: RPB5-like RNA polymerase subunit (From Topology)T: RPB5-like RNA polymerase subunitF: PF01191ECOD (1.6)
FA [auth s]PF03871e7eg8s1 A: a/b three-layered sandwichesX: Restriction endonuclease-likeH: Eukaryotic RPB5 N-terminal domain (From Topology)T: Eukaryotic RPB5 N-terminal domainF: PF03871ECOD (1.6)
GA [auth t]PF01192e7eg8t1 A: alpha arraysX: RPB6/omega subunit-like (From Homology)H: RPB6/omega subunit-likeT: RPB6F: PF01192ECOD (1.6)
HA [auth u]PF00575e7eg8u2 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF00575ECOD (1.6)
HA [auth u]PF03876e7eg8u1 A: a+b two layersX: Dodecin subunit-likeH: Flavin-binding protein dodecin-like (From Topology)T: Flavin-binding protein dodecin-likeF: PF03876ECOD (1.6)
IA [auth v]PF03870e7eg8v1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF03870ECOD (1.6)
JA [auth w]PF01096e7eg8w1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: PF01096ECOD (1.6)
JA [auth w]PF02150e7eg8w2 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: PF02150ECOD (1.6)
KA [auth x]PF01194e7eg8x1 A: alpha arraysX: HTHH: RPB10 (From Topology)T: RPB10F: PF01194ECOD (1.6)
LA [auth y]PF13656e7eg8y1 A: a+b two layersX: DCoH-likeH: RBP11-like subunits of RNA polymerase (From Topology)T: RBP11-like subunits of RNA polymeraseF: PF13656ECOD (1.6)
MA [auth z]PF03604e7eg8z1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: PF03604ECOD (1.6)
L [auth P]PF00352e7eg8P1 A: a+b two layersX: TBP-likeH: TATA-box binding protein-like (From Topology)T: TATA-box binding protein-likeF: PF00352ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF12157Protein of unknown function (DUF3591) (DUF3591)Protein of unknown function (DUF3591)- Family
C [auth D],
T [auth d]
PF05236Transcription initiation factor TFIID component TAF4 family (TAF4)Transcription initiation factor TFIID component TAF4 family- Family
D [auth E],
U [auth e]
PF04494WD40 associated region in TFIID subunit, NTD2 domain (TFIID_NTD2)WD40 associated region in TFIID subunit, NTD2 domain- Family
D [auth E],
U [auth e]
PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
E [auth F],
V [auth f]
PF07571TAF6 C-terminal HEAT repeat domain (TAF6_C)TAF6 C-terminal HEAT repeat domain- Repeat
E [auth F],
V [auth f]
PF02969TATA box binding protein associated factor (TAF) (TAF)TATA box binding protein associated factor (TAF)TAF proteins adopt a histone-like fold.Domain
F [auth G]PF04658TAFII55 protein conserved region (TAFII55_N)TAFII55 protein conserved region- Family
G [auth H]PF07524Bromodomain associated (Bromo_TP)Bromodomain associatedThis domain is predicted to bind DNA [1] and is often found associated with Pfam:PF00439 and in transcription factors. It has a histone-like fold.Domain
G [auth H]PF10406Transcription factor TFIID complex subunit 8 C-term (TAF8_C)Transcription factor TFIID complex subunit 8 C-termThis is the C-terminal, Delta, part of the TAF8 protein [1]. The N-terminal is generally the histone fold domain, Bromo_TP (Pfam:PF07524). TAF8 is one of the key subunits of the transcription factor for pol II, TFIID. TAF8 is one of the several gener ...This is the C-terminal, Delta, part of the TAF8 protein [1]. The N-terminal is generally the histone fold domain, Bromo_TP (Pfam:PF07524). TAF8 is one of the key subunits of the transcription factor for pol II, TFIID. TAF8 is one of the several general cofactors which are typically involved in gene activation to bring about the communication between gene-specific transcription factors and components of the general transcription machinery [2].
Domain
H [auth I],
W [auth i]
PF02291Transcription initiation factor IID, 31kD subunit (TFIID-31kDa)Transcription initiation factor IID, 31kD subunitThis family represents the N-terminus of the 31kD subunit (42kD in drosophila) of transcription initiation factor IID (TAFII31). TAFII31 binds to p53, and is an essential requirement for p53 mediated transcription activation.Domain
I [auth J],
X [auth j]
PF03540Transcription initiation factor TFIID 23-30kDa subunit (TFIID_30kDa)Transcription initiation factor TFIID 23-30kDa subunit- Family
J [auth L],
Z [auth l]
PF03847Transcription initiation factor TFIID subunit A (TFIID_20kDa)Transcription initiation factor TFIID subunit A- Domain
K [auth O]PF02751Transcription initiation factor IIA, gamma subunit (TFIIA_gamma_C)Transcription initiation factor IIA, gamma subunitAccurate transcription in vivo requires at least six general transcription initiation factors, in addition to RNA polymerase II. Transcription initiation factor IIA (TFIIA) is a multimeric protein which facilitates the binding of TFIID to the TATA b ...Accurate transcription in vivo requires at least six general transcription initiation factors, in addition to RNA polymerase II. Transcription initiation factor IIA (TFIIA) is a multimeric protein which facilitates the binding of TFIID to the TATA box. The C-terminal domain of the gamma subunit is a 12 stranded beta-barrel.
Domain
K [auth O]PF02268Transcription initiation factor IIA, gamma subunit, helical domain (TFIIA_gamma_N)Transcription initiation factor IIA, gamma subunit, helical domainAccurate transcription in vivo requires at least six general transcription initiation factors, in addition to RNA polymerase II. Transcription initiation factor IIA (TFIIA) is a multimeric protein which facilitates the binding of TFIID to the TATA ...Accurate transcription in vivo requires at least six general transcription initiation factors, in addition to RNA polymerase II. Transcription initiation factor IIA (TFIIA) is a multimeric protein which facilitates the binding of TFIID to the TATA box. The N-terminal domain of the gamma subunit is a 4 helix bundle.
Domain
N [auth R]PF00382Transcription factor TFIIB repeat (TFIIB)Transcription factor TFIIB repeat- Domain
O [auth S]PF05793Transcription initiation factor IIF, alpha subunit (TFIIF-alpha) (TFIIF_alpha)Transcription initiation factor IIF, alpha subunit (TFIIF-alpha)- Family
P [auth T]PF02270TFIIF, beta subunit HTH domain (TFIIF_beta)TFIIF, beta subunit HTH domainAccurate transcription in vivo requires at least six general transcription initiation factors, in addition to RNA polymerase II. Transcription initiation factor IIF (TFIIF) is a tetramer of two beta subunits associate with two alpha subunits which ...Accurate transcription in vivo requires at least six general transcription initiation factors, in addition to RNA polymerase II. Transcription initiation factor IIF (TFIIF) is a tetramer of two beta subunits associate with two alpha subunits which interacts directly with RNA polymerase II. The beta subunit of TFIIF is required for recruitment of RNA polymerase II onto the promoter.
Domain
P [auth T]PF17683TFIIF, beta subunit N-terminus (TFIIF_beta_N)TFIIF, beta subunit N-terminus- Family
S [auth c]PF07524Bromodomain associated (Bromo_TP)Bromodomain associatedThis domain is predicted to bind DNA [1] and is often found associated with Pfam:PF00439 and in transcription factors. It has a histone-like fold.Domain
Y [auth k]PF04719hTAFII28-like protein conserved region (TAFII28)hTAFII28-like protein conserved regionThe general transcription factor, TFIID, consists of the TATA-binding protein (TBP) associated with a series of TBP-associated factors (TAFs) that together participate in the assembly of the transcription preinitiation complex. The conserved region ...The general transcription factor, TFIID, consists of the TATA-binding protein (TBP) associated with a series of TBP-associated factors (TAFs) that together participate in the assembly of the transcription preinitiation complex. The conserved region is found at the C-terminal of most member proteins. The crystal structure of hTAFII28 with hTAFII18 shows that this region is involved in the binding of these two subunits. The conserved region contains four alpha helices and three loops arranged as in histone H3 [1,2].
Domain
AA [auth m]PF02269Transcription initiation factor IID, 18kD subunit (TFIID-18kDa)Transcription initiation factor IID, 18kD subunitThis family includes the Spt3 yeast transcription factors and the 18kD subunit from human transcription initiation factor IID (TFIID-18). Determination of the crystal structure reveals an atypical histone fold [1]Domain
BA [auth o]PF00623RNA polymerase Rpb1, domain 2 (RNA_pol_Rpb1_2)RNA polymerase Rpb1, domain 2RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). This domain, domain 2, contains the active site ...RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). This domain, domain 2, contains the active site. The invariant motif -NADFDGD- binds the active site magnesium ion [1,2].
Domain
BA [auth o]PF04990RNA polymerase Rpb1, domain 7 (RNA_pol_Rpb1_7)RNA polymerase Rpb1, domain 7RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). This domain, domain 7, represents a mobile modu ...RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). This domain, domain 7, represents a mobile module of the RNA polymerase. Domain 7 forms a substantial interaction with the lobe domain of Rpb2 (Pfam:PF04561) [1,2].
Domain
BA [auth o]PF05000RNA polymerase Rpb1, domain 4 (RNA_pol_Rpb1_4)RNA polymerase Rpb1, domain 4RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). This domain, domain 4, represents the funnel do ...RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). This domain, domain 4, represents the funnel domain. The funnel contain the binding site for some elongation factors [1,2].
Domain
BA [auth o]PF04983RNA polymerase Rpb1, domain 3 (RNA_pol_Rpb1_3)RNA polymerase Rpb1, domain 3RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). This domain, domain 3, represents the pore doma ...RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). This domain, domain 3, represents the pore domain. The 3' end of RNA is positioned close to this domain. The pore delimited by this domain is thought to act as a channel through which nucleotides enter the active site and/or where the 3' end of the RNA may be extruded during back-tracking [1,2].
Domain
BA [auth o]PF04992RNA polymerase Rpb1, domain 6 (RNA_pol_Rpb1_6)RNA polymerase Rpb1, domain 6RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). This domain, domain 6, represents a mobile modu ...RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). This domain, domain 6, represents a mobile module of the RNA polymerase. Domain 6 forms part of the shelf module [1,2]. This family appears to be specific to the largest subunit of RNA polymerase II.
Domain
BA [auth o]PF04998RNA polymerase Rpb1, domain 5 (RNA_pol_Rpb1_5)RNA polymerase Rpb1, domain 5RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). This domain, domain 5, represents the discontin ...RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). This domain, domain 5, represents the discontinuous cleft domain that is required to from the central cleft or channel where the DNA is bound [1,2].
Domain
BA [auth o]PF04997RNA polymerase Rpb1, domain 1 (RNA_pol_Rpb1_1)RNA polymerase Rpb1, domain 1RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). This domain, domain 1, represents the clamp do ...RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). This domain, domain 1, represents the clamp domain, which a mobile domain involved in positioning the DNA, maintenance of the transcription bubble and positioning of the nascent RNA strand [1,2].
Domain
CA [auth p]PF04561RNA polymerase Rpb2, domain 2 (RNA_pol_Rpb2_2)RNA polymerase Rpb2, domain 2RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). Rpb2 is the second largest subunit of the RNA po ...RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). Rpb2 is the second largest subunit of the RNA polymerase. This domain forms one of the two distinctive lobes of the Rpb2 structure. This domain is also known as the lobe domain [1]. DNA has been demonstrated to bind to the concave surface of the lobe domain, and plays a role in maintaining the transcription bubble [1]. Many of the bacterial members contain large insertions within this domain, as region known as dispensable region 1 (DRI).
Domain
CA [auth p]PF04560RNA polymerase Rpb2, domain 7 (RNA_pol_Rpb2_7)RNA polymerase Rpb2, domain 7RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). Rpb2 is the second largest subunit of the RNA p ...RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). Rpb2 is the second largest subunit of the RNA polymerase. This domain comprised of the structural domains anchor and clamp [1]. The clamp region (C-terminal) contains a zinc-binding motif [1]. The clamp region is named due to its interaction with the clamp domain found in Rpb1. The domain also contains a region termed "switch 4". The switches within the polymerase are thought to signal different stages of transcription [1].
Domain
CA [auth p]PF04565RNA polymerase Rpb2, domain 3 (RNA_pol_Rpb2_3)RNA polymerase Rpb2, domain 3RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). Domain 3, s also known as the fork domain and is ...RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). Domain 3, s also known as the fork domain and is proximal to catalytic site [1].
Domain
CA [auth p]PF04566RNA polymerase Rpb2, domain 4 (RNA_pol_Rpb2_4)RNA polymerase Rpb2, domain 4RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). Domain 4, is also known as the external 2 domain ...RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). Domain 4, is also known as the external 2 domain [1].
Domain
CA [auth p]PF04563RNA polymerase beta subunit (RNA_pol_Rpb2_1)RNA polymerase beta subunit- Family
CA [auth p]PF00562RNA polymerase Rpb2, domain 6 (RNA_pol_Rpb2_6)RNA polymerase Rpb2, domain 6RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). This domain represents the hybrid binding domain ...RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). This domain represents the hybrid binding domain and the wall domain [1]. The hybrid binding domain binds the nascent RNA strand / template DNA strand in the Pol II transcription elongation complex. This domain contains the important structural motifs, switch 3 and the flap loop and binds an active site metal ion[1]. This domain is also involved in binding to Rpb1 and Rpb3 [1]. Many of the bacterial members contain large insertions within this domain, as region known as dispensable region 2 (DRII).
Domain
CA [auth p]PF04567RNA polymerase Rpb2, domain 5 (RNA_pol_Rpb2_5)RNA polymerase Rpb2, domain 5RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). Domain 5, is also known as the external 2 domain ...RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). Domain 5, is also known as the external 2 domain [1].
Domain
DA [auth q]PF01193RNA polymerase Rpb3/Rpb11 dimerisation domain (RNA_pol_L)RNA polymerase Rpb3/Rpb11 dimerisation domainThe two eukaryotic subunits Rpb3 and Rpb11 dimerise to from a platform onto which the other subunits of the RNA polymerase assemble (D/L in archaea). The prokaryotic equivalent of the Rpb3/Rpb11 platform is the alpha-alpha dimer. The dimerisation do ...The two eukaryotic subunits Rpb3 and Rpb11 dimerise to from a platform onto which the other subunits of the RNA polymerase assemble (D/L in archaea). The prokaryotic equivalent of the Rpb3/Rpb11 platform is the alpha-alpha dimer. The dimerisation domain of the alpha subunit/Rpb3 is interrupted by an insert domain (Pfam:PF01000). Some of the alpha subunits also contain iron-sulphur binding domains (Pfam:PF00037). Rpb11 is found as a continuous domain. Members of this family include: alpha subunit from eubacteria, alpha subunits from chloroplasts, Rpb3 subunits from eukaryotes, Rpb11 subunits from eukaryotes, RpoD subunits from archaeal spp, and RpoL subunits from archaeal spp.
Domain
DA [auth q]PF01000RNA polymerase Rpb3/RpoA insert domain (RNA_pol_A_bac)RNA polymerase Rpb3/RpoA insert domainMembers of this family include: alpha subunit from eubacteria alpha subunits from chloroplasts Rpb3 subunits from eukaryotes RpoD subunits from archaealDomain
EA [auth r]PF03874RNA polymerase Rpb4 (RNA_pol_Rpb4)RNA polymerase Rpb4- Family
FA [auth s]PF01191RNA polymerase Rpb5, C-terminal domain (RNA_pol_Rpb5_C)RNA polymerase Rpb5, C-terminal domainThe assembly domain of Rpb5 [1]. The archaeal equivalent to this domain is subunit H. Subunit H lacks the N-terminal domain.Domain
FA [auth s]PF03871RNA polymerase Rpb5, N-terminal domain (RNA_pol_Rpb5_N)RNA polymerase Rpb5, N-terminal domainRpb5 has a bipartite structure which includes a eukaryote-specific N-terminal domain and a C-terminal domain resembling the archaeal RNAP subunit H [1,2]. The N-terminal domain is involved in DNA binding and is part of the jaw module in the RNA p ...Rpb5 has a bipartite structure which includes a eukaryote-specific N-terminal domain and a C-terminal domain resembling the archaeal RNAP subunit H [1,2]. The N-terminal domain is involved in DNA binding and is part of the jaw module in the RNA pol II structure [3]. This module is important for positioning the downstream DNA.
Domain
GA [auth t]PF01192RNA polymerase Rpb6 (RNA_pol_Rpb6)RNA polymerase Rpb6- Family
HA [auth u]PF03876SHS2 domain found in N terminus of Rpb7p/Rpc25p/MJ0397 (SHS2_Rpb7-N)SHS2 domain found in N terminus of Rpb7p/Rpc25p/MJ0397Rpb7 bind to Rpb4 to form a heterodimer. This complex is thought to interact with the nascent RNA strand during RNA polymerase II elongation[1]. This family includes the homologs from RNA polymerase I and III. In RNA polymerase I, Rpa43 is at leas ...Rpb7 bind to Rpb4 to form a heterodimer. This complex is thought to interact with the nascent RNA strand during RNA polymerase II elongation[1]. This family includes the homologs from RNA polymerase I and III. In RNA polymerase I, Rpa43 is at least one of the subunits contacted by the transcription factor TIF-IA [2]. The N terminus of Rpb7p/Rpc25p/MJ0397 has a SHS2 domain that is involved in protein-protein interaction [3].
Domain
HA [auth u]PF00575S1 RNA binding domain (S1)S1 RNA binding domainThe S1 domain occurs in a wide range of RNA associated proteins. It is structurally similar to cold shock protein which binds nucleic acids. The S1 domain has an OB-fold structure.Domain
IA [auth v]PF03870RNA polymerase Rpb8 (RNA_pol_Rpb8)RNA polymerase Rpb8- Family
JA [auth w]PF02150RNA polymerases M/15 Kd subunit (RNA_POL_M_15KD)RNA polymerases M/15 Kd subunit- Domain
JA [auth w]PF01096Transcription factor S-II (TFIIS) (TFIIS_C)Transcription factor S-II (TFIIS)- Domain
KA [auth x]PF01194RNA polymerases N / 8 kDa subunit (RNA_pol_N)RNA polymerases N / 8 kDa subunit- Domain
LA [auth y]PF01193RNA polymerase Rpb3/Rpb11 dimerisation domain (RNA_pol_L)RNA polymerase Rpb3/Rpb11 dimerisation domainThe two eukaryotic subunits Rpb3 and Rpb11 dimerise to from a platform onto which the other subunits of the RNA polymerase assemble (D/L in archaea). The prokaryotic equivalent of the Rpb3/Rpb11 platform is the alpha-alpha dimer. The dimerisation do ...The two eukaryotic subunits Rpb3 and Rpb11 dimerise to from a platform onto which the other subunits of the RNA polymerase assemble (D/L in archaea). The prokaryotic equivalent of the Rpb3/Rpb11 platform is the alpha-alpha dimer. The dimerisation domain of the alpha subunit/Rpb3 is interrupted by an insert domain (Pfam:PF01000). Some of the alpha subunits also contain iron-sulphur binding domains (Pfam:PF00037). Rpb11 is found as a continuous domain. Members of this family include: alpha subunit from eubacteria, alpha subunits from chloroplasts, Rpb3 subunits from eukaryotes, Rpb11 subunits from eukaryotes, RpoD subunits from archaeal spp, and RpoL subunits from archaeal spp.
Domain
LA [auth y]PF13656RNA polymerase Rpb3/Rpb11 dimerisation domain (RNA_pol_L_2)RNA polymerase Rpb3/Rpb11 dimerisation domainThe two eukaryotic subunits Rpb3 and Rpb11 dimerise to from a platform onto which the other subunits of the RNA polymerase assemble (D/L in archaea). The prokaryotic equivalent of the Rpb3/Rpb11 platform is the alpha-alpha dimer. The dimerisation do ...The two eukaryotic subunits Rpb3 and Rpb11 dimerise to from a platform onto which the other subunits of the RNA polymerase assemble (D/L in archaea). The prokaryotic equivalent of the Rpb3/Rpb11 platform is the alpha-alpha dimer. The dimerisation domain of the alpha subunit/Rpb3 is interrupted by an insert domain (Pfam:PF01000). Some of the alpha subunits also contain iron-sulphur binding domains (Pfam:PF00037). Rpb11 is found as a continuous domain. Members of this family include: alpha subunit from eubacteria, alpha subunits from chloroplasts, Rpb3 subunits from eukaryotes, Rpb11 subunits from eukaryotes, RpoD subunits from archaeal spp, and RpoL subunits from archaeal spp. Many of the members of this family carry only the N-terminal region of Rpb11.
Domain
MA [auth z]PF03604DNA directed RNA polymerase, 7 kDa subunit (DNA_RNApol_7kD)DNA directed RNA polymerase, 7 kDa subunit- Domain
L [auth P]PF00352Transcription factor TFIID (or TATA-binding protein, TBP) (TBP)Transcription factor TFIID (or TATA-binding protein, TBP)- Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Transcription initiation factor TFIID subunit 1
Transcription initiation factor TFIID subunit 2
C [auth D],
T [auth d]
Transcription initiation factor TFIID subunit 4
D [auth E],
U [auth e]
Transcription initiation factor TFIID subunit 5
E [auth F],
V [auth f]
Transcription initiation factor TFIID subunit 6
F [auth G]Transcription initiation factor TFIID subunit 7
G [auth H]Transcription initiation factor TFIID subunit 8
H [auth I],
W [auth i]
Transcription initiation factor TFIID subunit 9
I [auth J],
X [auth j]
Transcription initiation factor TFIID subunit 10
J [auth L],
Z [auth l]
Transcription initiation factor TFIID subunit 12
K [auth O]Transcription initiation factor IIA subunit 2
M [auth Q]Transcription initiation factor IIA subunit 1
N [auth R]Transcription initiation factor IIB
O [auth S]General transcription factor IIF subunit 1
P [auth T]General transcription factor IIF subunit 2
Q [auth X]DNA (85-MER)---
R [auth Y]DNA (85-MER)---
S [auth c]Transcription initiation factor TFIID subunit 3
Y [auth k]Transcription initiation factor TFIID subunit 11
AA [auth m]Transcription initiation factor TFIID subunit 13
BA [auth o]RPB1
CA [auth p]DNA-directed RNA polymerase subunit beta
DA [auth q]DNA-directed RNA polymerase II subunit RPB3
EA [auth r]DNA-directed RNA polymerase II subunit RPB4
FA [auth s]DNA-directed RNA polymerase II subunit E
GA [auth t]DNA-directed RNA polymerase II subunit F
HA [auth u]DNA-directed RNA polymerase II subunit RPB7
IA [auth v]DNA-directed RNA polymerases I, II, and III subunit RPABC3
JA [auth w]DNA-directed RNA polymerase II subunit RPB9
KA [auth x]RPB10
LA [auth y]RNA_pol_L_2 domain-containing protein -
MA [auth z]RPB12
L [auth P]TATA-box-binding protein

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR018359Bromodomain, conserved siteConserved Site
IPR009067TAFII-230 TBP-bindingDomain
IPR022591Transcription initiation factor TFIID subunit 1, histone acetyltransferase domainDomain
IPR036427Bromodomain-like superfamilyHomologous Superfamily
IPR040240Transcription initiation factor TFIID subunit 1Family
IPR001487BromodomainDomain
IPR041670Zinc knuckleDomain
IPR011177Transcription initiation factor TFIID subunit 1, animalFamily
IPR036741TAFII-230 TBP-binding domain superfamilyHomologous Superfamily
IPR016024Armadillo-type foldHomologous Superfamily
IPR027268Peptidase M4/M1, CTD superfamilyHomologous Superfamily
IPR037813Transcription initiation factor TFIID subunit 2Family
IPR042097Aminopeptidase N-like , N-terminal domain superfamliyHomologous Superfamily
C [auth D],
T [auth d]
IPR003894TAFH/NHR1Domain
C [auth D],
T [auth d]
IPR007900Transcription initiation factor TFIID component TAF4, C-terminalDomain
C [auth D],
T [auth d]
IPR009072Histone-foldHomologous Superfamily
C [auth D],
T [auth d]
IPR045144Transcription initiation factor TFIID component TAF4Family
C [auth D],
T [auth d]
IPR037249TAFH/NHR1 domain superfamilyHomologous Superfamily
D [auth E],
U [auth e]
IPR007582TFIID subunit TAF5, NTD2 domainDomain
D [auth E],
U [auth e]
IPR019775WD40 repeat, conserved siteConserved Site
D [auth E],
U [auth e]
IPR037264TFIID subunit TAF5, NTD2 domain superfamilyHomologous Superfamily
D [auth E],
U [auth e]
IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
D [auth E],
U [auth e]
IPR001680WD40 repeatRepeat
D [auth E],
U [auth e]
IPR020472G-protein beta WD-40 repeatRepeat
D [auth E],
U [auth e]
IPR006594LIS1 homology motifConserved Site
D [auth E],
U [auth e]
IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
E [auth F],
V [auth f]
IPR011442TAF6, C-terminal HEAT repeat domainDomain
E [auth F],
V [auth f]
IPR016024Armadillo-type foldHomologous Superfamily
E [auth F],
V [auth f]
IPR009072Histone-foldHomologous Superfamily
E [auth F],
V [auth f]
IPR037796Transcription initiation factor TFIID subunit 6Family
E [auth F],
V [auth f]
IPR046344TAF6, C-terminal HEAT repeat domain superfamilyHomologous Superfamily
E [auth F],
V [auth f]
IPR004823TATA box binding protein associated factor (TAF), histone-like fold domainDomain
F [auth G]IPR006751TAFII55 protein, conserved regionDomain
F [auth G]IPR037817Transcription initiation factor TFIID subunit 7Family
G [auth H]IPR009072Histone-foldHomologous Superfamily
G [auth H]IPR037818Transcription initiation factor TFIID subunit 8Family
G [auth H]IPR006565Bromodomain associated domainDomain
G [auth H]IPR019473Transcription factor TFIID, subunit 8, C-terminalDomain
H [auth I],
W [auth i]
IPR009072Histone-foldHomologous Superfamily
H [auth I],
W [auth i]
IPR003162Transcription initiation factor TAFII31Family
I [auth J],
X [auth j]
IPR003923Transcription initiation factor TFIID, 23-30kDa subunitFamily
J [auth L],
Z [auth l]
IPR009072Histone-foldHomologous Superfamily
J [auth L],
Z [auth l]
IPR037794Transcription initiation factor TFIID subunit 12Family
J [auth L],
Z [auth l]
IPR003228Transcription initiation factor TFIID subunit 12 domainDomain
K [auth O]IPR015871Transcription initiation factor IIA, gamma subunit, C-terminalDomain
K [auth O]IPR015872Transcription initiation factor IIA, gamma subunit, N-terminalDomain
K [auth O]IPR009083Transcription factor IIA, alpha-helical domainHomologous Superfamily
K [auth O]IPR009088Transcription factor IIA, beta-barrelHomologous Superfamily
K [auth O]IPR003194Transcription initiation factor IIA, gamma subunitFamily
M [auth Q]IPR004855Transcription factor IIA, alpha/beta subunitFamily
M [auth Q]IPR009088Transcription factor IIA, beta-barrelHomologous Superfamily
N [auth R]IPR000812Transcription factor TFIIBFamily
N [auth R]IPR013137Zinc finger, TFIIB-typeDomain
N [auth R]IPR023486Transcription factor TFIIB, conserved siteConserved Site
N [auth R]IPR013150Transcription factor TFIIB, cyclin-like domainDomain
N [auth R]IPR036915Cyclin-like superfamilyHomologous Superfamily
N [auth R]IPR013763Cyclin-like domainDomain
O [auth S]IPR008851Transcription initiation factor IIF, alpha subunitFamily
O [auth S]IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
O [auth S]IPR036390Winged helix DNA-binding domain superfamilyHomologous Superfamily
O [auth S]IPR011039Transcription Factor IIF, Rap30/Rap74, interactionHomologous Superfamily
P [auth T]IPR003196Transcription initiation factor IIF, beta subunitFamily
P [auth T]IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
P [auth T]IPR036390Winged helix DNA-binding domain superfamilyHomologous Superfamily
P [auth T]IPR040450TFIIF beta subunit, HTH domainDomain
P [auth T]IPR040504TFIIF, beta subunit, N-terminalDomain
P [auth T]IPR011039Transcription Factor IIF, Rap30/Rap74, interactionHomologous Superfamily
S [auth c]IPR009072Histone-foldHomologous Superfamily
S [auth c]IPR001965Zinc finger, PHD-typeDomain
S [auth c]IPR006565Bromodomain associated domainDomain
S [auth c]IPR013083Zinc finger, RING/FYVE/PHD-typeHomologous Superfamily
S [auth c]IPR019787Zinc finger, PHD-fingerDomain
S [auth c]IPR011011Zinc finger, FYVE/PHD-typeHomologous Superfamily
S [auth c]IPR019786Zinc finger, PHD-type, conserved siteConserved Site
Y [auth k]IPR009072Histone-foldHomologous Superfamily
Y [auth k]IPR045127Transcription initiation factor TFIID subunit 11-likeFamily
Y [auth k]IPR006809TAFII28-like protein domainDomain
AA [auth m]IPR009072Histone-foldHomologous Superfamily
AA [auth m]IPR003195Transcription initiation factor IID, subunit 13Family
BA [auth o]IPR007066RNA polymerase Rpb1, domain 3Domain
BA [auth o]IPR007081RNA polymerase Rpb1, domain 5Domain
BA [auth o]IPR007073RNA polymerase Rpb1, domain 7Domain
BA [auth o]IPR045867DNA-directed RNA polymerase, subunit beta-primeFamily
BA [auth o]IPR042102RNA polymerase Rpb1, domain 3 superfamilyHomologous Superfamily
BA [auth o]IPR007075RNA polymerase Rpb1, domain 6Domain
BA [auth o]IPR000684RNA polymerase II, heptapeptide repeat, eukaryoticRepeat
BA [auth o]IPR007083RNA polymerase Rpb1, domain 4Domain
BA [auth o]IPR038593RNA polymerase Rpb1, domain 7 superfamilyHomologous Superfamily
BA [auth o]IPR000722RNA polymerase, alpha subunitDomain
BA [auth o]IPR044893RNA polymerase Rpb1, clamp domain superfamilyHomologous Superfamily
BA [auth o]IPR038120RNA polymerase Rpb1, funnel domain superfamilyHomologous Superfamily
BA [auth o]IPR006592RNA polymerase, N-terminalDomain
BA [auth o]IPR007080RNA polymerase Rpb1, domain 1Domain
CA [auth p]IPR007642RNA polymerase Rpb2, domain 2Domain
CA [auth p]IPR015712DNA-directed RNA polymerase, subunit 2Family
CA [auth p]IPR037033DNA-directed RNA polymerase, subunit 2, hybrid-binding domain superfamilyHomologous Superfamily
CA [auth p]IPR037034RNA polymerase Rpb2, domain 2 superfamilyHomologous Superfamily
CA [auth p]IPR007120DNA-directed RNA polymerase, subunit 2, hybrid-binding domainDomain
CA [auth p]IPR007121RNA polymerase, beta subunit, conserved siteConserved Site
CA [auth p]IPR007645RNA polymerase Rpb2, domain 3Domain
CA [auth p]IPR007646RNA polymerase Rpb2, domain 4Domain
CA [auth p]IPR007647RNA polymerase Rpb2, domain 5Domain
CA [auth p]IPR014724RNA polymerase Rpb2, OB-foldHomologous Superfamily
CA [auth p]IPR007644RNA polymerase, beta subunit, protrusionDomain
CA [auth p]IPR007641RNA polymerase Rpb2, domain 7Domain
DA [auth q]IPR011262DNA-directed RNA polymerase, insert domainDomain
DA [auth q]IPR011263DNA-directed RNA polymerase, RpoA/D/Rpb3-typeDomain
DA [auth q]IPR036643DNA-directed RNA polymerase, insert domain superfamilyHomologous Superfamily
DA [auth q]IPR022842DNA-directed RNA polymerase subunit Rpo3/Rpb3/RPAC1Family
DA [auth q]IPR001514DNA-directed RNA polymerase, 30-40kDa subunit, conserved siteConserved Site
DA [auth q]IPR036603RNA polymerase, RBP11-like subunitHomologous Superfamily
EA [auth r]IPR005574RNA polymerase subunit Rpb4/RPC9Family
EA [auth r]IPR010997HRDC-like superfamilyHomologous Superfamily
EA [auth r]IPR006590RNA polymerase Rpb4/RPC9, coreDomain
EA [auth r]IPR038324Rpb4/RPC9 superfamilyHomologous Superfamily
EA [auth r]IPR045222DNA-directed RNA polymerase II subunit Rpb4-likeFamily
FA [auth s]IPR014381DNA-directed RNA polymerase subunit Rpo5/Rpb5Family
FA [auth s]IPR036710RNA polymerase Rpb5, N-terminal domain superfamilyHomologous Superfamily
FA [auth s]IPR035913RPB5-like RNA polymerase subunit superfamilyHomologous Superfamily
FA [auth s]IPR000783RNA polymerase, subunit H/Rpb5 C-terminalDomain
FA [auth s]IPR020608RNA polymerase, subunit H/Rpb5, conserved siteConserved Site
FA [auth s]IPR005571RNA polymerase, Rpb5, N-terminalDomain
GA [auth t]IPR020708DNA-directed RNA polymerase, 14-18kDa subunit, conserved siteConserved Site
GA [auth t]IPR036161RPB6/omega subunit-like superfamilyHomologous Superfamily
GA [auth t]IPR028363DNA-directed RNA polymerase, subunit RPB6Family
GA [auth t]IPR006110RNA polymerase, subunit omega/Rpo6/RPB6Family
GA [auth t]IPR006111Archaeal Rpo6/eukaryotic RPB6 RNA polymerase subunitFamily
HA [auth u]IPR036898RNA polymerase Rpb7-like, N-terminal domain superfamilyHomologous Superfamily
HA [auth u]IPR003029S1 domainDomain
HA [auth u]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
HA [auth u]IPR045113RNA polymerase subunit Rpb7-likeFamily
HA [auth u]IPR005576RNA polymerase Rpb7-like , N-terminalDomain
IA [auth v]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
IA [auth v]IPR005570DNA-directed RNA polymerases I, II, and III subunit RPABC3Family
JA [auth w]IPR012164DNA-directed RNA polymerase subunit/transcription factor SFamily
JA [auth w]IPR001222Zinc finger, TFIIS-typeDomain
JA [auth w]IPR034012Pol II subunit B9, C-terminal zinc ribbonDomain
JA [auth w]IPR019761DNA-directed RNA polymerase M, 15kDa subunit, conserved siteConserved Site
JA [auth w]IPR001529DNA-directed RNA polymerase, M/15kDa subunitDomain
KA [auth x]IPR023580RNA polymerase subunit RPB10Homologous Superfamily
KA [auth x]IPR020789RNA polymerases, subunit N, zinc binding siteBinding Site
KA [auth x]IPR000268DNA-directed RNA polymerase subunit RPABC5/Rpb10Family
LA [auth y]IPR022905DNA-directed RNA polymerase subunit Rpo11-likeFamily
LA [auth y]IPR009025DNA-directed RNA polymerase, RBP11-like dimerisation domainDomain
LA [auth y]IPR036603RNA polymerase, RBP11-like subunitHomologous Superfamily
LA [auth y]IPR008193DNA-directed RNA polymerase Rpb11, 13-16kDa subunit, conserved siteConserved Site
LA [auth y]IPR037685RNA polymerase RBP11Family
MA [auth z]IPR006591RNA polymerase archaeal subunit P/eukaryotic subunit RPABC4Family
MA [auth z]IPR029040RNA polymerase subunit RPABC4/transcription elongation factor Spt4Homologous Superfamily
MA [auth z]IPR039747DNA-directed RNA polymerases I, II, and III subunit RPABC4Family
L [auth P]IPR030491TATA-box binding protein, conserved siteConserved Site
L [auth P]IPR000814TATA-box binding proteinFamily
L [auth P]IPR012295TBP domain superfamilyHomologous Superfamily
L [auth P]IPR033710TATA-box binding protein, eukaryoticFamily

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
PharosP21675
PharosQ6P1X5
C [auth D],
T [auth d]
PharosO00268
D [auth E],
U [auth e]
PharosQ15542
E [auth F],
V [auth f]
PharosP49848
F [auth G]PharosQ15545
G [auth H]PharosQ7Z7C8
H [auth I],
W [auth i]
PharosQ16594
I [auth J],
X [auth j]
PharosQ12962
J [auth L],
Z [auth l]
PharosQ16514
K [auth O]PharosP52657
M [auth Q]PharosP52655
N [auth R]PharosQ00403
P [auth T]PharosP13984
S [auth c]PharosQ5VWG9
Y [auth k]PharosQ15544
AA [auth m]PharosQ15543
L [auth P]PharosP20226