1WKY

Crystal structure of alkaline mannanase from Bacillus sp. strain JAMB-602: catalytic domain and its Carbohydrate Binding Module

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d1wkya1	All beta proteins	Galactose-binding domain-like	Galactose-binding domain-like	beta-mannanase CBM	Endo-beta-1,4-mannanase C-terminal domain	(Bacillus sp. JAMB-602 ) [TaxId: 244966 ],	SCOPe (2.08)
A	d1wkya2	Alpha and beta proteins (a/b)	TIM beta/alpha-barrel	(Trans)glycosidases	beta-glycanases	Beta-mannanase	(Bacillus sp. JAMB-602 ) [TaxId: 244966 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	beta-mannanase cbm	8020786	4001642	SCOP2 (2022-06-29)
A	SCOP2 Family	beta-glycanases	8020788	4003164	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	galactose-binding domain-like	8033166	3000087	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	(Trans)glycosidases	8033168	3000313	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	EUF07613	e1wkyA1	A: beta sandwiches	X: jelly-roll	H: Concanavalin A-like	T: Galactose-binding domain-like	F: EUF07613	ECOD (1.6)
A	Cellulase	e1wkyA2	A: a/b barrels	X: TIM beta/alpha-barrel	H: TIM barrels (From Topology)	T: TIM barrels	F: Cellulase	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.20.20.80	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Glycosidases	CATH (4.3.0)
A	2.60.120.260	Mainly Beta	Sandwich	Jelly Rolls	Galactose-binding domain-like	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF00150	Cellulase (glycosyl hydrolase family 5) (Cellulase)	Cellulase (glycosyl hydrolase family 5)		Domain
A	PF21253	Mannanase, galactose-binding domain-like (Mann_GBD_bact)	Mannanase, galactose-binding domain-like	This is a galactose-binding domain-like found at the C-terminal of alkaline mannanases, such as Swiss:Q4W8M3 from Bacillus sp. JAMB-602 [1] and related bacterial sequences which belong to the Glycoside Hydrolase Family 5 (Pfam:PF00150).	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	endo-beta-1,4-Mannanase	hydrolase activity, acting on glycosyl bonds hydrolase activity, hydrolyzing O-glycosyl compounds hydrolase activity catalytic activity cation binding ion binding binding metal ion binding small molecule binding	carbohydrate metabolic process catabolic process glucan catabolic process carbohydrate catabolic process primary metabolic process macromolecule catabolic process polysaccharide metabolic process glucan metabolic process polysaccharide catabolic process metabolic process cellular process macromolecule metabolic process	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR049475	Mannanase, galactose-binding domain-like	Domain
A	IPR017853	Glycoside hydrolase superfamily	Homologous Superfamily
A	IPR001547	Glycoside hydrolase, family 5	Domain
A	IPR008979	Galactose-binding-like domain superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.