2BUG

Solution structure of the TPR domain from Protein phosphatase 5 in complex with Hsp90 derived peptide

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations
Protein Modification Annotation

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d2buga1	All alpha proteins	alpha-alpha superhelix	TPR-like	Tetratricopeptide repeat (TPR)	Protein phosphatase 5	HUMAN (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	TPR-like	8038647	3001345	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	TPR_11_3	e2bugA1	A: alpha superhelices	X: Repetitive alpha hairpins	H: ARM repeat (From Topology)	T: ARM repeat	F: TPR_11_3	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	1.25.40.10	Mainly Alpha	Alpha Horseshoe	Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat	Tetratricopeptide repeat domain	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF00515	Tetratricopeptide repeat (TPR_1)	Tetratricopeptide repeat	-	Repeat

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	SERINE/THREONINE PROTEIN PHOSPHATASE 5	Hsp90 protein binding protein binding binding heat shock protein binding phosphoric ester hydrolase activity phosphoprotein phosphatase activity protein serine/threonine phosphatase activity catalytic activity, acting on a protein hydrolase activity, acting on ester bonds phosphatase activity hydrolase activity catalytic activity histone modifying activity histone phosphatase activity Hsp90 protein binding protein binding binding heat shock protein binding phosphoric ester hydrolase activity phosphoprotein phosphatase activity protein serine/threonine phosphatase activity catalytic activity, acting on a protein hydrolase activity, acting on ester bonds phosphatase activity hydrolase activity catalytic activity histone modifying activity histone phosphatase activity histone H2AXS140 phosphatase activity RNA polymerase II CTD heptapeptide repeat modifying activity RNA polymerase II CTD heptapeptide repeat phosphatase activity RNA polymerase II CTD heptapeptide repeat S2 phosphatase activity RNA binding nucleic acid binding RNA polymerase II CTD heptapeptide repeat T4 phosphatase activity adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding myosin phosphatase activity ADP binding RNA polymerase II CTD heptapeptide repeat Y1 phosphatase activity cytoskeletal protein binding tau protein binding lipid binding MAP kinase serine/threonine phosphatase activity MAP kinase phosphatase activity RNA polymerase II CTD heptapeptide repeat S7 phosphatase activity RNA polymerase II CTD heptapeptide repeat S5 phosphatase activity cation binding metal ion binding identical protein binding calmodulin-dependent protein phosphatase activity calcium-dependent protein serine/threonine phosphatase activity	cellular process cell cycle mitotic cell cycle cellular response to stimulus positive regulation of cell communication regulation of cellular process positive regulation of signal transduction positive regulation of canonical NF-kappaB signal transduction response to stimulus signaling positive regulation of biological process regulation of signal transduction intracellular signal transduction cell communication cellular process cell cycle mitotic cell cycle cellular response to stimulus positive regulation of cell communication regulation of cellular process positive regulation of signal transduction positive regulation of canonical NF-kappaB signal transduction response to stimulus signaling positive regulation of biological process regulation of signal transduction intracellular signal transduction cell communication positive regulation of response to stimulus regulation of intracellular signal transduction intracellular signaling cassette signal transduction positive regulation of cellular process regulation of biological process regulation of signaling biological regulation positive regulation of intracellular signal transduction canonical NF-kappaB signal transduction regulation of response to stimulus regulation of cell communication regulation of canonical NF-kappaB signal transduction positive regulation of signaling protein dephosphorylation dephosphorylation primary metabolic process macromolecule modification phosphate-containing compound metabolic process metabolic process protein metabolic process macromolecule metabolic process protein modification process phosphorus metabolic process RNA metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription nucleic acid biosynthetic process biosynthetic process response to lipid response to fatty acid response to chemical response to oxygen-containing compound response to arachidonate MAPK cascade response to metal ion response to lead ion response to morphine response to isoquinoline alkaloid response to nitrogen compound response to alkaloid peptidyl-serine dephosphorylation double-strand break repair DNA metabolic process cellular response to stress DNA damage response response to stress DNA repair peptidyl-threonine dephosphorylation	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol cell periphery plasma membrane membrane membrane-bounded organelle intracellular organelle organelle intracellular membrane-bounded organelle nucleus membrane-enclosed lumen intracellular organelle lumen cellular anatomical structure intracellular anatomical structure cytoplasm cytosol cell periphery plasma membrane membrane membrane-bounded organelle intracellular organelle organelle intracellular membrane-bounded organelle nucleus membrane-enclosed lumen intracellular organelle lumen nucleoplasm organelle lumen nuclear lumen protein-containing complex protein folding chaperone complex intracellular protein-containing complex
B	HSP90	histone deacetylase binding protein binding binding enzyme binding protein phosphatase binding phosphatase binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding histone deacetylase binding protein binding binding enzyme binding protein phosphatase binding phosphatase binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding adenyl deoxyribonucleotide binding deoxyribonucleotide binding purine deoxyribonucleotide binding dATP binding ubiquitin protein ligase binding ubiquitin-like protein ligase binding protein tyrosine kinase binding kinase binding protein kinase binding pyrimidine ribonucleotide binding CTP binding pyrimidine nucleotide binding scaffold protein binding guanyl nucleotide binding GTP binding guanyl ribonucleotide binding GTPase binding sulfonylurea receptor binding signaling receptor binding identical protein binding protein homodimerization activity protein dimerization activity TPR domain binding protein domain specific binding pyrophosphatase activity ATP hydrolysis activity ribonucleoside triphosphate phosphatase activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides hydrolase activity hydrolase activity, acting on acid anhydrides catalytic activity ATP-dependent activity protein-containing complex binding MHC protein complex binding MHC class II protein complex binding RNA binding nucleic acid binding mRNA binding cytoskeletal protein binding tau protein binding enzyme regulator activity molecular function regulator activity nitric-oxide synthase regulator activity Rho GDP-dissociation inhibitor binding GDP-dissociation inhibitor binding ATP-dependent protein folding chaperone protein folding chaperone UTP binding transmembrane transporter binding unfolded protein binding DNA polymerase binding disordered domain specific binding	regulation of biosynthetic process regulation of nitric oxide biosynthetic process regulation of biological process regulation of cellular process biological regulation positive regulation of biological process reactive nitrogen species metabolic process positive regulation of nitric oxide metabolic process nitric oxide metabolic process positive regulation of metabolic process nitric oxide biosynthetic process biosynthetic process positive regulation of biosynthetic process cellular process regulation of biosynthetic process regulation of nitric oxide biosynthetic process regulation of biological process regulation of cellular process biological regulation positive regulation of biological process reactive nitrogen species metabolic process positive regulation of nitric oxide metabolic process nitric oxide metabolic process positive regulation of metabolic process nitric oxide biosynthetic process biosynthetic process positive regulation of biosynthetic process cellular process metabolic process regulation of nitric oxide metabolic process positive regulation of nitric oxide biosynthetic process regulation of metabolic process positive regulation of cellular process response to stimulus response to chemical response to xenobiotic stimulus regulation of protein stability regulation of biological quality protein stabilization response to stress response to abiotic stimulus response to cold response to temperature stimulus ribonucleoprotein complex biogenesis telomerase holoenzyme complex assembly protein-containing complex organization protein-RNA complex assembly cellular component organization cellular component biogenesis protein-RNA complex organization cellular component assembly protein-containing complex assembly cellular component organization or biogenesis inclusion body assembly neurofibrillary tangle assembly response to topologically incorrect protein response to unfolded protein response to antibiotic cellular response to stimulus cellular response to heat cellular response to stress response to heat positive regulation of organelle organization telomere organization regulation of DNA biosynthetic process positive regulation of macromolecule biosynthetic process RNA-templated DNA biosynthetic process regulation of primary metabolic process nucleobase-containing compound metabolic process telomere maintenance via telomere lengthening positive regulation of telomere maintenance via telomere lengthening positive regulation of macromolecule metabolic process regulation of nucleobase-containing compound metabolic process positive regulation of telomere maintenance positive regulation of nucleobase-containing compound metabolic process primary metabolic process DNA metabolic process regulation of chromosome organization regulation of telomere maintenance via telomere lengthening regulation of organelle organization positive regulation of chromosome organization telomere maintenance positive regulation of DNA metabolic process positive regulation of telomere maintenance via telomerase regulation of macromolecule biosynthetic process macromolecule metabolic process DNA biosynthetic process regulation of DNA metabolic process regulation of telomere maintenance regulation of cellular component organization positive regulation of cellular component organization nucleic acid biosynthetic process telomere maintenance via telomerase chromosome organization positive regulation of DNA biosynthetic process regulation of macromolecule metabolic process nucleobase-containing compound biosynthetic process macromolecule biosynthetic process nucleic acid metabolic process regulation of telomere maintenance via telomerase organelle organization regulation of defense response regulation of response to biotic stimulus biological process involved in interspecies interaction between organisms regulation of response to external stimulus response to other organism defense response response to external stimulus response to biotic stimulus regulation of defense response to virus defense response to virus regulation of response to stimulus defense response to other organism regulation of response to stress positive regulation of defense response to virus by host regulation of defense response to virus by host response to external biotic stimulus response to virus response to osmotic stress response to salt stress chaperone-mediated protein complex assembly multicellular organismal movement musculoskeletal movement multicellular organismal process system process nervous system process neuromuscular process skeletal muscle contraction muscle contraction muscle system process striated muscle contraction catabolic process positive regulation of protein metabolic process macromolecule catabolic process protein metabolic process regulation of protein metabolic process protein catabolic process regulation of catabolic process positive regulation of protein catabolic process positive regulation of catabolic process regulation of protein catabolic process cytokine production regulation of cytokine production regulation of multicellular organismal process regulation of interferon-beta production interferon-beta production positive regulation of type I interferon production type I interferon production gene expression regulation of gene expression positive regulation of gene expression positive regulation of multicellular organismal process positive regulation of interferon-beta production positive regulation of cytokine production regulation of type I interferon production protein unfolding protein localization regulation of localization cellular localization regulation of protein localization localization regulation of cellular localization cellular macromolecule localization macromolecule localization regulation of protein modification process regulation of post-translational protein modification regulation of protein ubiquitination protein ubiquitination macromolecule modification regulation of protein modification by small protein conjugation or removal protein modification process post-translational protein modification protein modification by small protein conjugation protein modification by small protein conjugation or removal positive regulation of cell size regulation of cellular component size regulation of cell size regulation of anatomical structure size transport establishment of localization mitochondrial transport cell projection organization plasma membrane bounded cell projection assembly regulation of lamellipodium assembly regulation of lamellipodium organization positive regulation of cell projection organization lamellipodium assembly plasma membrane bounded cell projection organization positive regulation of cellular component biogenesis regulation of cell projection organization regulation of cell projection assembly positive regulation of lamellipodium assembly regulation of cellular component biogenesis positive regulation of lamellipodium organization regulation of plasma membrane bounded cell projection assembly lamellipodium organization cell projection assembly regulation of plasma membrane bounded cell projection organization positive regulation of plasma membrane bounded cell projection assembly protein polymerization regulation of protein-containing complex assembly positive regulation of protein-containing complex assembly regulation of protein polymerization positive regulation of protein polymerization protein refolding protein maturation protein folding regulation of postsynaptic membrane neurotransmitter receptor levels regulation of apoptotic process apoptotic process regulation of programmed cell death cell death programmed cell death establishment of protein localization nitrogen compound transport nucleocytoplasmic transport positive regulation of nucleocytoplasmic transport nuclear transport positive regulation of establishment of protein localization regulation of protein localization to nucleus positive regulation of protein transport import into nucleus regulation of protein import into nucleus establishment of localization in cell protein import into nucleus positive regulation of intracellular transport regulation of intracellular transport regulation of transport positive regulation of protein localization to nucleus regulation of establishment of protein localization positive regulation of protein import into nucleus intracellular transport regulation of nucleocytoplasmic transport protein localization to nucleus regulation of protein transport establishment of protein localization to organelle positive regulation of transport protein transport protein localization to organelle positive regulation of protein localization regulation of intracellular protein transport positive regulation of intracellular protein transport intracellular protein transport autophagy chaperone-mediated autophagy process utilizing autophagic mechanism muscle cell apoptotic process striated muscle cell apoptotic process cardiac muscle cell apoptotic process heart process regulation of heart contraction regulation of system process positive regulation of blood circulation positive regulation of cardiac muscle contraction cardiac muscle contraction circulatory system process positive regulation of striated muscle contraction blood circulation regulation of cardiac muscle contraction regulation of muscle system process positive regulation of heart contraction regulation of blood circulation regulation of striated muscle contraction regulation of muscle contraction positive regulation of muscle contraction heart contraction positive regulation of response to biotic stimulus positive regulation of response to stimulus positive regulation of response to external stimulus positive regulation of immune response innate immune response regulation of immune system process positive regulation of immune system process positive regulation of innate immune response immune response regulation of innate immune response defense response to symbiont immune system process positive regulation of defense response activation of innate immune response regulation of immune response activation of immune response response to hormone response to endogenous stimulus response to estrogen developmental process neuron migration cellular developmental process nervous system development generation of neurons neurogenesis multicellular organism development cell differentiation anatomical structure development cell migration cell motility system development establishment of protein localization to mitochondrial membrane protein targeting mitochondrial membrane organization outer mitochondrial membrane organization mitochondrion organization membrane organization establishment of protein localization to membrane protein insertion into mitochondrial outer membrane localization within membrane protein localization to membrane protein localization to mitochondrion protein targeting to mitochondrion establishment of protein localization to mitochondrion response to oxygen-containing compound response to nitrogen compound response to cocaine response to alkaloid cellular response to virus	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol cell periphery plasma membrane membrane sperm plasma membrane growth cone axon cell projection distal axon neuron projection axonal growth cone cellular anatomical structure intracellular anatomical structure cytoplasm cytosol cell periphery plasma membrane membrane sperm plasma membrane growth cone axon cell projection distal axon neuron projection axonal growth cone plasma membrane bounded cell projection site of polarized growth apical part of cell plasma membrane region apical plasma membrane cell surface protein-containing complex extracellular region membrane-bounded organelle vesicle lumen intracellular vesicle membrane-enclosed lumen cytoplasmic vesicle lumen secretory granule lumen intracellular membrane-bounded organelle endomembrane system intracellular organelle lumen intracellular organelle cytoplasmic vesicle organelle lumen organelle secretory granule secretory vesicle vesicle brush border membrane cluster of actin-based cell projections brush border cell projection membrane endocytic vesicle lumen endocytic vesicle extracellular exosome extracellular vesicle extracellular organelle extracellular space extracellular membrane-bounded organelle extracellular matrix external encapsulating structure collagen-containing extracellular matrix dendrite terminus somatodendritic compartment dendritic growth cone dendrite dendritic tree basal part of cell basal plasma membrane basolateral plasma membrane perinuclear region of cytoplasm cell body neuronal cell body mitochondrion myelin sheath pigment granule melanosome lytic vacuole vacuolar lumen vacuole lysosomal lumen lysosome ficolin-1-rich granule ficolin-1-rich granule lumen nucleus nucleoplasm nuclear lumen sperm midpiece cilium 9+2 motile cilium motile cilium sperm mitochondrial sheath sperm flagellum

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR051134	Protein Phosphatase PPP	Family
A	IPR011990	Tetratricopeptide-like helical domain superfamily	Homologous Superfamily
A	IPR041753	PP5, C-terminal metallophosphatase domain	Domain
A	IPR019734	Tetratricopeptide repeat	Repeat
A	IPR004843	Calcineurin-like phosphoesterase domain, ApaH type	Domain
A	IPR013235	PPP domain	Domain
A	IPR029052	Metallo-dependent phosphatase-like	Homologous Superfamily
A	IPR006186	Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase	Domain
B	IPR020568	Ribosomal protein uS5 domain 2-type superfamily	Homologous Superfamily
B	IPR001404	Heat shock protein Hsp90 family	Family
B	IPR020575	Heat shock protein Hsp90, N-terminal	Domain
B	IPR003594	Histidine kinase/HSP90-like ATPase domain	Domain
B	IPR019805	Heat shock protein Hsp90, conserved site	Conserved Site
B	IPR036890	Histidine kinase/HSP90-like ATPase superfamily	Homologous Superfamily
B	IPR037196	HSP90, C-terminal domain	Homologous Superfamily

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A	Pharos: P53041	Crohn disease Alzheimer disease amyloidosis acquired metabolic disease malignant mesothelioma subependymal giant cell astrocytoma inflammatory bowel disease neurodegenerative disease lung cancer osteosarcoma
B	Pharos: P07900	anaplastic large cell lymphoma contact dermatitis HIV infectious disease breast cancer Neoplasm Metastasis breast carcinoma osteosarcoma plasma cell myeloma Sjogren syndrome breast disease exocrine pancreatic carcinoma lung adenocarcinoma lymphoplasmacytic lymphoma malignant pancreatic neoplasm ovarian cancer anaplastic large cell lymphoma contact dermatitis HIV infectious disease breast cancer Neoplasm Metastasis breast carcinoma osteosarcoma plasma cell myeloma Sjogren syndrome breast disease exocrine pancreatic carcinoma lung adenocarcinoma lymphoplasmacytic lymphoma malignant pancreatic neoplasm ovarian cancer psoriasis cancer hematologic disease juvenile dermatomyositis lung cancer major depressive disorder pancreatic ductal adenocarcinoma sinusitis cystic fibrosis large cell medulloblastoma lung disease

Protein Modification Annotation

Modified Residue(s)
Chain	Residue(s)	Description
B	ACE	RESID: AA0041 , AA0042 , AA0043 , AA0044 , AA0045 , AA0046 , AA0049 , AA0050 , AA0051 , AA0052 , AA0053 , AA0054 , AA0354 PSI-MOD : N-acetyl-L-alanine MOD:00050 , N-acetyl-L-aspartic acid MOD:00051 , N-acetyl-L-cysteine MOD:00052 , N-acetyl-S-archeol-cysteine MOD:00897 , N-acetyl-L-glutamic acid MOD:00053 , N-acetyl-L-glutamine MOD:00054 , N-acetylglycine MOD:00055 , N-acetyl-L-methionine MOD:00058 , N-acetyl-L-proline MOD:00059 , N-acetyl-L-serine MOD:00060 , N,O-diacetylated L-serine MOD:00648 , N-acetyl-L-threonine MOD:00061 , N-acetyl-L-tyrosine MOD:00062 , N-acetyl-L-valine MOD:00063 , N2-acetyl-L-arginine MOD:00359

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.