2F5T

Crystal Structure of the sugar binding domain of the archaeal transcriptional regulator TrmB

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A [auth X]	d2f5tx1	All beta proteins	Sm-like fold	TrmB C-terminal domain-like	TrmB C-terminal domain-like	Transcriptional regulator TrmB	(Thermococcus litoralis ) [TaxId: 2265 ],	SCOPe (2.08)
A [auth X]	d2f5tx2	Alpha and beta proteins (a+b)	Phospholipase D/nuclease	Phospholipase D/nuclease	TrmB middle domain-like	Transcriptional regulator TrmB	(Thermococcus litoralis ) [TaxId: 2265 ],	SCOPe (2.08)
A [auth X]	d2f5tx3	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Thermococcus litoralis ) [TaxId: 2265 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A [auth X]	SCOP2 Family	TrmB C-terminal domain-like	8021673	4001719	SCOP2 (2022-06-29)
A [auth X]	SCOP2 Family	TrmB middle domain-like	8021675	4002451	SCOP2 (2022-06-29)
A [auth X]	SCOP2 Superfamily	TrmB C-terminal domain-like	8034053	3000294	SCOP2 (2022-06-29)
A [auth X]	SCOP2 Superfamily	Phospholipase D/nuclease-like	8034055	3000664	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A [auth X]	Regulator_TrmB_C	e2f5tX1	A: beta barrels	X: SH3	H: TrmB C-terminal domain-like (From Topology)	T: TrmB C-terminal domain-like	F: Regulator_TrmB_C	ECOD (1.6)
A [auth X]	Regulator_TrmB_N	e2f5tX2	A: a+b three layers	X: Phospholipase D/nuclease (From Topology)	H: Phospholipase D/nuclease (From Topology)	T: Phospholipase D/nuclease	F: Regulator_TrmB_N	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A [auth X]	3.30.870.10	Alpha Beta	2-Layer Sandwich	Endonuclease	Chain A	CATH (4.3.0)
A [auth X]	2.30.30.690	Mainly Beta	Roll	SH3 type barrels.		CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A [auth X]	PF11495	Archaeal transcriptional regulator TrmB (Regulator_TrmB)	Archaeal transcriptional regulator TrmB	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth X]	archaeal transcriptional regulator TrmB	DNA binding binding nucleic acid binding	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth X]	IPR051797	Transcription regulator TrmB-like	Family
A [auth X]	IPR021586	Transcription regulator TrmB, C-terminal	Domain
A [auth X]	IPR054965	HTH-type sugar sensing transcriptional regulator TrmB	Family
A [auth X]	IPR036388	Winged helix-like DNA-binding domain superfamily	Homologous Superfamily
A [auth X]	IPR002831	Transcription regulator TrmB, N-terminal	Domain
A [auth X]	IPR036390	Winged helix DNA-binding domain superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.