3K2Y

Crystal structure of protein lp_0118 from Lactobacillus plantarum,northeast structural genomics consortium target LpR91B

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	Nucleic acid-binding proteins	8094212	3000135	SCOP2B (2022-06-29)
B	SCOP2 Family	HIRAN domain-like	8051259	4007268	SCOP2 (2022-06-29)
B	SCOP2 Superfamily	Nucleic acid-binding proteins	8094212	3000135	SCOP2 (2022-06-29)
C	SCOP2B Superfamily	Nucleic acid-binding proteins	8094212	3000135	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Nucleic acid-binding proteins	8094212	3000135	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	HIRAN_1	e3k2yA1	A: a+b two layers	X: HLTF protein HIRAN domain (From Topology)	H: HLTF protein HIRAN domain (From Topology)	T: HLTF protein HIRAN domain	F: HIRAN_1	ECOD (1.6)
B	HIRAN_1	e3k2yB1	A: a+b two layers	X: HLTF protein HIRAN domain (From Topology)	H: HLTF protein HIRAN domain (From Topology)	T: HLTF protein HIRAN domain	F: HIRAN_1	ECOD (1.6)
C	HIRAN_1	e3k2yC1	A: a+b two layers	X: HLTF protein HIRAN domain (From Topology)	H: HLTF protein HIRAN domain (From Topology)	T: HLTF protein HIRAN domain	F: HIRAN_1	ECOD (1.6)
D	HIRAN_1	e3k2yD1	A: a+b two layers	X: HLTF protein HIRAN domain (From Topology)	H: HLTF protein HIRAN domain (From Topology)	T: HLTF protein HIRAN domain	F: HIRAN_1	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.30.70.2330	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits		CATH (4.3.0)
B	3.30.70.2330	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits		CATH (4.3.0)
C	3.30.70.2330	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits		CATH (4.3.0)
D	3.30.70.2330	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits		CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D	PF08797	HIRAN domain (HIRAN)	HIRAN domain	The HIRAN domain (HIP116, Rad5p N-terminal) is found in the N-terminal regions of the SWI2/SNF2 proteins typified by HIP116 and Rad5p. The HIRAN domain is found as a standalone protein in several bacteria and prophages, or fused to other catalytic do ...	The HIRAN domain (HIP116, Rad5p N-terminal) is found in the N-terminal regions of the SWI2/SNF2 proteins typified by HIP116 and Rad5p. The HIRAN domain is found as a standalone protein in several bacteria and prophages, or fused to other catalytic domains, such as a nuclease of the restriction endonuclease fold and TDP1-like DNA phosphoesterases, in the eukaryotes [1]. It has been predicted that this domain functions as a DNA-binding domain that probably recognises features associated with damaged DNA or stalled replication forks [1]	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	uncharacterized protein lp_0118	DNA binding binding nucleic acid binding hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides hydrolase activity hydrolase activity, acting on acid anhydrides catalytic activity cation binding transition metal ion binding zinc ion binding ion binding metal ion binding small molecule binding	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR014905	HIRAN domain	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.