3J40

Validated Near-Atomic Resolution Structure of Bacteriophage Epsilon15 Derived from Cryo-EM and Modeling

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A [auth N]	PHA00669	e3j40N1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: PHA00669	ECOD (1.6)
B [auth M]	PHA00669	e3j40M1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: PHA00669	ECOD (1.6)
D [auth H]	PHA00669	e3j40H1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: PHA00669	ECOD (1.6)
I [auth K]	PHA00669	e3j40K1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: PHA00669	ECOD (1.6)
L [auth I]	PHA00669	e3j40I1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: PHA00669	ECOD (1.6)
M [auth J]	PHA00669	e3j40J1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: PHA00669	ECOD (1.6)
N [auth L]	PHA00669	e3j40L1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: PHA00669	ECOD (1.6)
C [auth A]	PHA00665	e3j40A1	A: a+b three layers	X: Major capsid protein GP7 (From Topology)	H: Major capsid protein GP7 (From Topology)	T: Major capsid protein GP7	F: PHA00665	ECOD (1.6)
E [auth F]	PHA00665	e3j40F1	A: a+b three layers	X: Major capsid protein GP7 (From Topology)	H: Major capsid protein GP7 (From Topology)	T: Major capsid protein GP7	F: PHA00665	ECOD (1.6)
F [auth B]	PHA00665	e3j40B1	A: a+b three layers	X: Major capsid protein GP7 (From Topology)	H: Major capsid protein GP7 (From Topology)	T: Major capsid protein GP7	F: PHA00665	ECOD (1.6)
G	PHA00665	e3j40G1	A: a+b three layers	X: Major capsid protein GP7 (From Topology)	H: Major capsid protein GP7 (From Topology)	T: Major capsid protein GP7	F: PHA00665	ECOD (1.6)
H [auth D]	PHA00665	e3j40D1	A: a+b three layers	X: Major capsid protein GP7 (From Topology)	H: Major capsid protein GP7 (From Topology)	T: Major capsid protein GP7	F: PHA00665	ECOD (1.6)
J [auth C]	PHA00665	e3j40C1	A: a+b three layers	X: Major capsid protein GP7 (From Topology)	H: Major capsid protein GP7 (From Topology)	T: Major capsid protein GP7	F: PHA00665	ECOD (1.6)
K [auth E]	PHA00665	e3j40E1	A: a+b three layers	X: Major capsid protein GP7 (From Topology)	H: Major capsid protein GP7 (From Topology)	T: Major capsid protein GP7	F: PHA00665	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A [auth N], B [auth M], D [auth H], I [auth K], L [auth I], A [auth N], B [auth M], D [auth H], I [auth K], L [auth I], M [auth J], N [auth L]	PF21628	Major coat protein-like (Gp10-like)	Major coat protein-like	This protein family includes Major coat protein from Salmonella phage epsilon15 (Gp10) and similar sequences from tailed bacteriophages and from bacterial prophages. Gp10 binds to the outer surface of the virus capsid. It adopts a jellyroll viral pro ...	This protein family includes Major coat protein from Salmonella phage epsilon15 (Gp10) and similar sequences from tailed bacteriophages and from bacterial prophages. Gp10 binds to the outer surface of the virus capsid. It adopts a jellyroll viral protein fold with two sheets consisting of four beta-strands each [1].	Domain
C [auth A], E [auth F], F [auth B], G, H [auth D], C [auth A], E [auth F], F [auth B], G, H [auth D], J [auth C], K [auth E]	PF20911	Major capsid protein GP7 (GP7)	Major capsid protein GP7	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth N], B [auth M], D [auth H], I [auth K], L [auth I], A [auth N], B [auth M], D [auth H], I [auth K], L [auth I], M [auth J], N [auth L]	gp10	-	-	viral capsid virion component viral capsid, decoration
C [auth A], E [auth F], F [auth B], G, H [auth D], C [auth A], E [auth F], F [auth B], G, H [auth D], J [auth C], K [auth E]	gp7	-	-	viral capsid virion component

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth N], B [auth M], D [auth H], I [auth K], L [auth I], A [auth N], B [auth M], D [auth H], I [auth K], L [auth I], M [auth J], N [auth L]	IPR049302	Major coat protein-like	Family
C [auth A], E [auth F], F [auth B], G, H [auth D], C [auth A], E [auth F], F [auth B], G, H [auth D], J [auth C], K [auth E]	IPR048813	Major capsid protein GP7-like	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.