5FN8

Crystal structure of rat CD45 extracellular region, domains d3-d4

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	fn3	e5fn8A1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: fn3	ECOD (1.6)
B	fn3	e5fn8B2	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: fn3	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF00041	Fibronectin type III domain (fn3)	Fibronectin type III domain		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE C	phosphoric ester hydrolase activity molecular transducer activity catalytic activity, acting on a protein phosphatase activity signaling receptor activity hydrolase activity phosphoprotein phosphatase activity hydrolase activity, acting on ester bonds protein tyrosine phosphatase activity transmembrane receptor protein phosphatase activity transmembrane signaling receptor activity transmembrane receptor protein tyrosine phosphatase activity catalytic activity cytoskeletal protein binding phosphoric ester hydrolase activity molecular transducer activity catalytic activity, acting on a protein phosphatase activity signaling receptor activity hydrolase activity phosphoprotein phosphatase activity hydrolase activity, acting on ester bonds protein tyrosine phosphatase activity transmembrane receptor protein phosphatase activity transmembrane signaling receptor activity transmembrane receptor protein tyrosine phosphatase activity catalytic activity cytoskeletal protein binding ankyrin binding protein binding binding enzyme regulator activity molecular function regulator activity protein kinase regulator activity kinase regulator activity heparan sulfate proteoglycan binding proteoglycan binding carbohydrate derivative binding sulfur compound binding spectrin binding protein-containing complex binding non-membrane spanning protein tyrosine phosphatase activity signaling receptor binding histone modifying activity histone phosphatase activity histone H2AXY142 phosphatase activity kinase binding enzyme binding protein kinase binding protein tyrosine phosphatase activity, metal-dependent heparin binding glycosaminoglycan binding	adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains response to stimulus regulation of leukocyte activation regulation of cell activation B cell activation involved in immune response positive regulation of macromolecule biosynthetic process regulation of primary metabolic process multicellular organism development positive regulation of immune response regulation of immune system process positive regulation of macromolecule metabolic process system development positive regulation of DNA recombination positive regulation of immunoglobulin mediated immune response adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains response to stimulus regulation of leukocyte activation regulation of cell activation B cell activation involved in immune response positive regulation of macromolecule biosynthetic process regulation of primary metabolic process multicellular organism development positive regulation of immune response regulation of immune system process positive regulation of macromolecule metabolic process system development positive regulation of DNA recombination positive regulation of immunoglobulin mediated immune response immune response DNA recombination primary metabolic process DNA metabolic process immune effector process regulation of gene expression biosynthetic process positive regulation of DNA metabolic process regulation of response to stimulus B cell mediated immunity positive regulation of production of molecular mediator of immune response regulation of macromolecule biosynthetic process metabolic process regulation of DNA metabolic process immunoglobulin production regulation of developmental process positive regulation of adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains somatic cell DNA recombination somatic diversification of immunoglobulins involved in immune response positive regulation of lymphocyte activation somatic recombination of immunoglobulin gene segments positive regulation of biosynthetic process regulation of immunoglobulin mediated immune response regulation of B cell activation leukocyte activation involved in immune response positive regulation of isotype switching positive regulation of immune effector process positive regulation of cellular process production of molecular mediator of immune response positive regulation of immunoglobulin production regulation of isotype switching cell activation regulation of macromolecule metabolic process macromolecule biosynthetic process nucleic acid metabolic process positive regulation of gene expression immune system process somatic diversification of immune receptors via germline recombination within a single locus cellular process regulation of lymphocyte activation lymphocyte mediated immunity regulation of immune effector process multicellular organismal process regulation of DNA recombination positive regulation of leukocyte mediated immunity regulation of cellular process cell activation involved in immune response nucleobase-containing compound metabolic process positive regulation of developmental process positive regulation of cell activation positive regulation of metabolic process anatomical structure development positive regulation of leukocyte activation leukocyte mediated immunity somatic diversification of immune receptors regulation of nucleobase-containing compound metabolic process positive regulation of adaptive immune response positive regulation of immune system process somatic recombination of immunoglobulin genes involved in immune response developmental process regulation of biological process positive regulation of nucleobase-containing compound metabolic process regulation of adaptive immune response regulation of B cell mediated immunity somatic diversification of immunoglobulins regulation of leukocyte mediated immunity regulation of immune response positive regulation of multicellular organismal process regulation of production of molecular mediator of immune response macromolecule metabolic process regulation of metabolic process isotype switching immune system development immunoglobulin production involved in immunoglobulin-mediated immune response positive regulation of lymphocyte mediated immunity positive regulation of biological process lymphocyte activation positive regulation of B cell mediated immunity leukocyte activation positive regulation of response to stimulus regulation of adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains positive regulation of isotype switching to IgG isotypes regulation of multicellular organismal process lymphocyte activation involved in immune response regulation of biosynthetic process B cell activation biological regulation gene expression adaptive immune response immunoglobulin mediated immune response positive regulation of B cell activation regulation of isotype switching to IgG isotypes regulation of lymphocyte mediated immunity regulation of immunoglobulin production isotype switching to IgG isotypes thymic T cell selection cellular developmental process hemopoiesis cell development mononuclear cell differentiation lymphocyte differentiation T cell differentiation in thymus T cell activation cell differentiation negative thymic T cell selection T cell differentiation negative T cell selection T cell selection leukocyte differentiation interleukin-8 production cytokine production regulation of cytokine production regulation of interleukin-8 production negative regulation of biological process negative regulation of interleukin-2 production negative regulation of cellular process negative regulation of macromolecule metabolic process regulation of interleukin-2 production negative regulation of metabolic process interleukin-2 production negative regulation of cytokine production negative regulation of gene expression negative regulation of biosynthetic process negative regulation of macromolecule biosynthetic process negative regulation of multicellular organismal process cellular response to stimulus negative regulation of signaling signaling response to cytokine regulation of signal transduction negative regulation of cell communication cytokine-mediated signaling pathway cell communication response to interleukin-4 cellular response to cytokine stimulus signal transduction cellular response to interleukin-4 negative regulation of interleukin-4-mediated signaling pathway regulation of signaling interleukin-4-mediated signaling pathway cell surface receptor signaling pathway negative regulation of response to stimulus regulation of cytokine-mediated signaling pathway regulation of interleukin-4-mediated signaling pathway negative regulation of signal transduction response to peptide regulation of response to cytokine stimulus negative regulation of response to cytokine stimulus negative regulation of cytokine-mediated signaling pathway response to chemical regulation of cell communication protein dephosphorylation dephosphorylation macromolecule modification phosphate-containing compound metabolic process protein metabolic process protein modification process phosphorus metabolic process cell death extrinsic apoptotic signaling pathway apoptotic signaling pathway apoptotic process programmed cell death negative regulation of intracellular signal transduction intracellular signal transduction regulation of intracellular signal transduction intracellular signaling cassette regulation of MAPK cascade negative regulation of ERK1 and ERK2 cascade MAPK cascade ERK1 and ERK2 cascade regulation of ERK1 and ERK2 cascade negative regulation of MAPK cascade regulation of localization import into cell positive regulation of cellular component organization regulation of cellular component organization transport vesicle-mediated transport cellular component organization localization positive regulation of endocytosis phagocytosis cellular component organization or biogenesis regulation of endocytosis regulation of transport regulation of phagocytosis regulation of vesicle-mediated transport establishment of localization positive regulation of phagocytosis positive regulation of transport endocytosis regulation of stem cell proliferation cell population proliferation positive regulation of cell population proliferation positive regulation of stem cell proliferation stem cell proliferation regulation of cell population proliferation regulation of cell adhesion negative regulation of cell adhesion cell adhesion negative regulation of cell adhesion involved in substrate-bound cell migration substrate-dependent cell migration cell migration cell motility regulation of protein modification process regulation of catalytic activity regulation of protein phosphorylation negative regulation of phosphate metabolic process negative regulation of catalytic activity regulation of transferase activity negative regulation of kinase activity negative regulation of transferase activity regulation of phosphate metabolic process negative regulation of protein modification process negative regulation of protein metabolic process protein phosphorylation phosphorylation regulation of protein metabolic process negative regulation of molecular function negative regulation of protein kinase activity regulation of protein kinase activity regulation of molecular function regulation of kinase activity negative regulation of protein phosphorylation negative regulation of phosphorus metabolic process regulation of phosphorylation regulation of phosphorus metabolic process negative regulation of phosphorylation leukocyte proliferation mononuclear cell proliferation lymphocyte proliferation T cell proliferation T cell mediated immunity negative regulation of lymphocyte mediated immunity negative regulation of leukocyte mediated cytotoxicity negative regulation of cell killing regulation of T cell mediated immunity T cell mediated cytotoxicity negative regulation of immune response negative regulation of T cell mediated cytotoxicity negative regulation of immune effector process regulation of leukocyte mediated cytotoxicity negative regulation of adaptive immune response leukocyte mediated cytotoxicity negative regulation of adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains regulation of T cell mediated cytotoxicity negative regulation of immune system process regulation of cell killing negative regulation of leukocyte mediated immunity negative regulation of T cell mediated immunity cell killing response to aldosterone response to ketone response to lipid response to endogenous stimulus response to alcohol response to oxygen-containing compound response to mineralocorticoid response to corticosteroid response to hormone response to steroid hormone cell-cell adhesion leukocyte cell-cell adhesion regulation of programmed cell death regulation of apoptotic process regulation of extrinsic apoptotic signaling pathway regulation of apoptotic signaling pathway positive regulation of B cell proliferation regulation of B cell proliferation positive regulation of mononuclear cell proliferation regulation of lymphocyte proliferation regulation of leukocyte proliferation positive regulation of lymphocyte proliferation B cell proliferation positive regulation of leukocyte proliferation regulation of mononuclear cell proliferation heterotypic cell-cell adhesion RNA metabolic process negative regulation of RNA biosynthetic process RNA biosynthetic process DNA-templated transcription nucleic acid biosynthetic process regulation of RNA metabolic process transcription by RNA polymerase II negative regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process regulation of transcription by RNA polymerase II negative regulation of DNA-templated transcription negative regulation of transcription by RNA polymerase II nucleobase-containing compound biosynthetic process regulation of DNA-templated transcription negative regulation of RNA metabolic process natural killer cell activation natural killer cell differentiation positive regulation of leukocyte mediated cytotoxicity positive regulation of T cell mediated cytotoxicity positive regulation of T cell mediated immunity positive regulation of cell killing positive regulation of T cell activation positive regulation of T cell proliferation regulation of leukocyte cell-cell adhesion positive regulation of leukocyte cell-cell adhesion positive regulation of cell-cell adhesion regulation of cell-cell adhesion positive regulation of cell adhesion regulation of T cell activation regulation of T cell proliferation biological process involved in interspecies interaction between organisms response to other organism defense response response to external stimulus response to biotic stimulus defense response to virus defense response to other organism response to stress response to external biotic stimulus response to virus positive regulation of cell communication immune response-regulating cell surface receptor signaling pathway positive regulation of signal transduction regulation of Fc receptor mediated stimulatory signaling pathway immune response-activating signaling pathway immune response-regulating signaling pathway immune response-activating cell surface receptor signaling pathway Fc receptor mediated stimulatory signaling pathway positive regulation of Fc receptor mediated stimulatory signaling pathway activation of immune response positive regulation of signaling B cell differentiation B cell receptor signaling pathway antigen receptor-mediated signaling pathway regulation of leukocyte differentiation regulation of cell differentiation positive regulation of T cell differentiation regulation of cell development gamma-delta T cell activation positive regulation of cell development regulation of gamma-delta T cell differentiation regulation of T cell differentiation positive regulation of hemopoiesis positive regulation of cell differentiation regulation of lymphocyte differentiation regulation of multicellular organismal development regulation of gamma-delta T cell activation positive regulation of gamma-delta T cell differentiation gamma-delta T cell differentiation regulation of hemopoiesis positive regulation of leukocyte differentiation positive regulation of gamma-delta T cell activation positive regulation of lymphocyte differentiation T cell receptor signaling pathway positive regulation of ERK1 and ERK2 cascade positive regulation of MAPK cascade positive regulation of intracellular signal transduction cell cycle phase transition cell cycle cell cycle process regulation of alpha-beta T cell activation positive regulation of alpha-beta T cell proliferation alpha-beta T cell proliferation alpha-beta T cell activation positive regulation of alpha-beta T cell activation regulation of alpha-beta T cell proliferation positive thymic T cell selection positive T cell selection hematopoietic stem cell migration positive regulation of locomotion regulation of cell motility positive regulation of cell migration positive regulation of hematopoietic stem cell migration regulation of hematopoietic stem cell migration regulation of locomotion positive regulation of cell motility regulation of cell migration locomotion regulation of humoral immune response humoral immune response regulation of humoral immune response mediated by circulating immunoglobulin humoral immune response mediated by circulating immunoglobulin positive regulation of humoral immune response positive regulation of humoral immune response mediated by circulating immunoglobulin positive regulation of apoptotic signaling pathway positive regulation of programmed cell death positive regulation of extrinsic apoptotic signaling pathway positive regulation of apoptotic process cell surface receptor signaling pathway via STAT regulation of receptor signaling pathway via JAK-STAT negative regulation of receptor signaling pathway via JAK-STAT negative regulation of receptor signaling pathway via STAT regulation of receptor signaling pathway via STAT cell surface receptor signaling pathway via JAK-STAT animal organ development hematopoietic or lymphoid organ development tissue development bone marrow development skeletal system development bone development regulation of antigen receptor-mediated signaling pathway positive regulation of antigen receptor-mediated signaling pathway positive regulation of interleukin-2 production positive regulation of cytokine production cellular localization inorganic ion homeostasis intracellular calcium ion homeostasis homeostatic process monoatomic ion transmembrane transport calcium ion homeostasis negative regulation of sequestering of calcium ion calcium ion transport metal ion transport maintenance of location in cell monoatomic cation transmembrane transport intracellular monoatomic cation homeostasis monoatomic ion homeostasis monoatomic ion transport intracellular chemical homeostasis monoatomic cation homeostasis monoatomic cation transport regulation of sequestering of calcium ion intracellular monoatomic ion homeostasis calcium ion transmembrane import into cytosol sequestering of calcium ion inorganic ion transmembrane transport inorganic cation transmembrane transport maintenance of location transmembrane transport release of sequestered calcium ion into cytosol cellular homeostasis chemical homeostasis calcium ion transmembrane transport response to ionizing radiation response to radiation response to abiotic stimulus response to gamma radiation stem cell development stem cell differentiation regulation of cell cycle hematopoietic progenitor cell differentiation regulation of tumor necrosis factor production positive regulation of tumor necrosis factor superfamily cytokine production tumor necrosis factor superfamily cytokine production positive regulation of tumor necrosis factor production tumor necrosis factor production regulation of tumor necrosis factor superfamily cytokine production positive regulation of phosphorylation positive regulation of protein metabolic process peptidyl-tyrosine modification positive regulation of phosphate metabolic process positive regulation of peptidyl-tyrosine phosphorylation positive regulation of protein modification process peptidyl-amino acid modification positive regulation of protein phosphorylation positive regulation of phosphorus metabolic process regulation of peptidyl-tyrosine phosphorylation peptidyl-tyrosine phosphorylation	membrane microdomain cellular anatomical structure membrane cell periphery cell surface plasma membrane external side of plasma membrane side of membrane anchoring junction cell junction focal adhesion cell-substrate junction membrane raft cell projection membrane microdomain cellular anatomical structure membrane cell periphery cell surface plasma membrane external side of plasma membrane side of membrane anchoring junction cell junction focal adhesion cell-substrate junction membrane raft cell projection bleb plasma membrane bounded cell projection synapse cytoplasmic side of plasma membrane cytoplasmic side of membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR016130	Protein-tyrosine phosphatase, active site	Active Site
A, B	IPR024739	Protein tyrosine phosphatase, receptor type, N-terminal	Domain
A, B	IPR016335	Receptor-type tyrosine-protein phosphatase C	Family
A, B	IPR013783	Immunoglobulin-like fold	Homologous Superfamily
A, B	IPR050348	Protein-Tyrosine Phosphatase	Family
A, B	IPR003595	Protein-tyrosine phosphatase, catalytic	Domain
A, B	IPR029021	Protein-tyrosine phosphatase-like	Homologous Superfamily
A, B	IPR003961	Fibronectin type III	Domain
A, B	IPR000242	Tyrosine-specific protein phosphatase, PTPase domain	Domain
A, B	IPR000387	Tyrosine-specific protein phosphatases domain	Domain
A, B	IPR036116	Fibronectin type III superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.