5FKZ
Structure of E.coli Constitutive lysine decarboxylase
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth E] | OKR_DC_1_C | e5fkzE2 | A: a+b two layers | X: MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase (From Topology) | H: MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase (From Topology) | T: MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase | F: OKR_DC_1_C | ECOD (1.6) |
A [auth E] | OKR_DC_1_3rd | e5fkzE4 | A: a+b two layers | X: C-terminal domain in some PLP-dependent transferases (From Topology) | H: C-terminal domain in some PLP-dependent transferases (From Topology) | T: C-terminal domain in some PLP-dependent transferases | F: OKR_DC_1_3rd | ECOD (1.6) |
A [auth E] | OKR_DC_1_N | e5fkzE3 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Class I glutamine amidotransferase-like | T: CheY-like | F: OKR_DC_1_N | ECOD (1.6) |
A [auth E] | OKR_DC_1_N2 | e5fkzE1 | A: a/b three-layered sandwiches | X: PLP-dependent transferases (From Topology) | H: PLP-dependent transferases (From Topology) | T: PLP-dependent transferases | F: OKR_DC_1_N2 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A [auth E] | PF03709 | Orn/Lys/Arg decarboxylase, N-terminal domain (OKR_DC_1_N) | Orn/Lys/Arg decarboxylase, N-terminal domain | This domain has a flavodoxin-like fold, and is termed the "wing" domain because of its position in the overall 3D structure. | Domain |
A [auth E] | PF01276 | Orn/Lys/Arg decarboxylase, major domain (OKR_DC_1) | Orn/Lys/Arg decarboxylase, major domain | Domain | |
A [auth E] | PF03711 | Orn/Lys/Arg decarboxylase, C-terminal domain (OKR_DC_1_C) | Orn/Lys/Arg decarboxylase, C-terminal domain | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
A [auth E] | LYSINE DECARBOXYLASE, CONSTITUTIVE |
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InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
A [auth E] | IPR005308 | Orn/Lys/Arg decarboxylase, N-terminal | Domain |
A [auth E] | IPR036633 | Orn/Lys/Arg decarboxylase, C-terminal domain superfamily | Homologous Superfamily |
A [auth E] | IPR015424 | Pyridoxal phosphate-dependent transferase | Homologous Superfamily |
A [auth E] | IPR015421 | Pyridoxal phosphate-dependent transferase, major domain | Homologous Superfamily |
A [auth E] | IPR015422 | Pyridoxal phosphate-dependent transferase, small domain | Homologous Superfamily |
A [auth E] | IPR000310 | Orn/Lys/Arg decarboxylase, major domain | Domain |
A [auth E] | IPR011193 | Ornithine/lysine/arginine decarboxylase | Family |
A [auth E] | IPR008286 | Orn/Lys/Arg decarboxylase, C-terminal | Domain |