5K8J
Structure of Caulobacter crescentus VapBC1 (apo form)
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | UNK_F_TYPE | e5k8jA1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: AbrB | F: UNK_F_TYPE | ECOD (1.6) |
D | UNK_F_TYPE | e5k8jD1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: AbrB | F: UNK_F_TYPE | ECOD (1.6) |
B | PIN | e5k8jB1 | A: a/b three-layered sandwiches | X: HAD domain-like | H: HAD domain-related | T: PIN domain-like | F: PIN | ECOD (1.6) |
C | PIN | e5k8jC1 | A: a/b three-layered sandwiches | X: HAD domain-like | H: HAD domain-related | T: PIN domain-like | F: PIN | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
B | 3.40.50.1010 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | 5'-nuclease | CATH (4.3.0) |
C | 3.40.50.1010 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | 5'-nuclease | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF01850 | PIN domain (PIN) | PIN domain | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
VapB family protein | - | - | - | |
Ribonuclease VapC | - | - |
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR037914 | SpoVT-AbrB domain superfamily | Homologous Superfamily | |
IPR002716 | PIN domain | Domain | |
IPR029060 | PIN-like domain superfamily | Homologous Superfamily | |
IPR022907 | VapC family | Family | |
IPR050556 | Type II toxin-antitoxin system RNase | Family |