5ZAP

Atomic structure of the herpes simplex virus type 2 B-capsid

External Resource: Annotation

Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A [auth G], B [auth A], C [auth B], D [auth C], E [auth D], A [auth G], B [auth A], C [auth B], D [auth C], E [auth D], F [auth E], G [auth F], H, I, J, K, L, M, N, O, P	PF01802	Herpesvirus VP23 like capsid protein (Herpes_V23)	Herpesvirus VP23 like capsid protein	-	Family
A [auth G], B [auth A], C [auth B], D [auth C], E [auth D], A [auth G], B [auth A], C [auth B], D [auth C], E [auth D], F [auth E], G [auth F], H, I, J, K, L, M, N, O, P	PF04496	Herpesvirus UL35 family (Herpes_UL35)	Herpesvirus UL35 family	-	Family
A [auth G], B [auth A], C [auth B], D [auth C], E [auth D], A [auth G], B [auth A], C [auth B], D [auth C], E [auth D], F [auth E], G [auth F], H, I, J, K, L, M, N, O, P	PF03122	Herpes virus major capsid protein (Herpes_MCP)	Herpes virus major capsid protein	-	Family
A [auth G], B [auth A], C [auth B], D [auth C], E [auth D], A [auth G], B [auth A], C [auth B], D [auth C], E [auth D], F [auth E], G [auth F], H, I, J, K, L, M, N, O, P	PF03327	Herpesvirus capsid shell protein VP19C (Herpes_VP19C)	Herpesvirus capsid shell protein VP19C	-	Family
AA [auth a], CA [auth c], DA [auth d], Q, R, AA [auth a], CA [auth c], DA [auth d], Q, R, T, U, W, X, Z	PF01802	Herpesvirus VP23 like capsid protein (Herpes_V23)	Herpesvirus VP23 like capsid protein	-	Family
AA [auth a], CA [auth c], DA [auth d], Q, R, AA [auth a], CA [auth c], DA [auth d], Q, R, T, U, W, X, Z	PF04496	Herpesvirus UL35 family (Herpes_UL35)	Herpesvirus UL35 family	-	Family
BA [auth b], EA [auth e], S, V, Y	PF04496	Herpesvirus UL35 family (Herpes_UL35)	Herpesvirus UL35 family	-	Family
BA [auth b], EA [auth e], S, V, Y	PF03327	Herpesvirus capsid shell protein VP19C (Herpes_VP19C)	Herpesvirus capsid shell protein VP19C	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth G], B [auth A], C [auth B], D [auth C], E [auth D], A [auth G], B [auth A], C [auth B], D [auth C], E [auth D], F [auth E], G [auth F], H, I, J, K, L, M, N, O, P	Major capsid protein	structural molecule activity	-	host intracellular membrane-bounded organelle host cellular component host intracellular part cellular anatomical structure host cell part host intracellular region host cell nucleus host intracellular organelle viral capsid icosahedral viral capsid virion component T=16 icosahedral viral capsid
AA [auth a], CA [auth c], DA [auth d], Q, R, AA [auth a], CA [auth c], DA [auth d], Q, R, T, U, W, X, Z	Triplex capsid protein 2	structural molecule activity	-	viral capsid virion component host intracellular membrane-bounded organelle host cellular component host intracellular part cellular anatomical structure host cell part host intracellular region host cell nucleus host intracellular organelle
BA [auth b], EA [auth e], S, V, Y	Triplex capsid protein 1	DNA binding binding nucleic acid binding	virion assembly viral process viral capsid assembly viral life cycle	viral capsid virion component host intracellular membrane-bounded organelle host cellular component host intracellular part cellular anatomical structure host cell part host intracellular region host cell nucleus host intracellular organelle
FA [auth f], GA [auth g], HA [auth h], IA [auth i], JA [auth j], FA [auth f], GA [auth g], HA [auth h], IA [auth i], JA [auth j], KA [auth k], LA [auth l], MA [auth m], NA [auth n], OA [auth o], PA [auth p], QA [auth q], RA [auth r], SA [auth s], TA [auth t]	Small capsomere-interacting protein	-	viral process	viral capsid virion component host intracellular membrane-bounded organelle host cellular component host intracellular part cellular anatomical structure host cell part host intracellular region host cell nucleus host intracellular organelle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth G], B [auth A], C [auth B], D [auth C], E [auth D], A [auth G], B [auth A], C [auth B], D [auth C], E [auth D], F [auth E], G [auth F], H, I, J, K, L, M, N, O, P	IPR000912	Herpesvirus major capsid protein	Family
A [auth G], B [auth A], C [auth B], D [auth C], E [auth D], A [auth G], B [auth A], C [auth B], D [auth C], E [auth D], F [auth E], G [auth F], H, I, J, K, L, M, N, O, P	IPR023233	Herpesvirus major capsid protein, upper domain superfamily	Homologous Superfamily
AA [auth a], CA [auth c], DA [auth d], Q, R, AA [auth a], CA [auth c], DA [auth d], Q, R, T, U, W, X, Z	IPR002690	Herpesvirus capsid protein 2	Family
BA [auth b], EA [auth e], S, V, Y	IPR004999	Herpesvirus capsid shell protein 1	Family
FA [auth f], GA [auth g], HA [auth h], IA [auth i], JA [auth j], FA [auth f], GA [auth g], HA [auth h], IA [auth i], JA [auth j], KA [auth k], LA [auth l], MA [auth m], NA [auth n], OA [auth o], PA [auth p], QA [auth q], RA [auth r], SA [auth s], TA [auth t]	IPR007584	Herpesvirus UL35	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.