6O20
Cryo-EM structure of TRPV5 with calmodulin bound
External Resource: Annotation
- Domain Annotation: SCOP2 Classification
- Domain Annotation: ECOD Classification
- Domain Annotation: CATH
- Protein Family Annotation
- Gene Ontology: Gene Product Annotation
- InterPro: Protein Family Classification
- Membrane Protein Annotation: OPM
- Membrane Protein Annotation: PDBTM
- Membrane Protein Annotation: MemProtMD
- Membrane Protein Annotation: mpstruc
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Voltage-gated potassium channels | 8089819 | 3000023 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | Ankyrin repeat | 8089700 | 3000154 | SCOP2B (2022-06-29) |
E [auth C] | SCOP2B Superfamily | Ankyrin repeat | 8089700 | 3000154 | SCOP2B (2022-06-29) |
E [auth C] | SCOP2B Superfamily | Voltage-gated potassium channels | 8089819 | 3000023 | SCOP2B (2022-06-29) |
F [auth D] | SCOP2B Superfamily | Ankyrin repeat | 8089700 | 3000154 | SCOP2B (2022-06-29) |
F [auth D] | SCOP2B Superfamily | Voltage-gated potassium channels | 8089819 | 3000023 | SCOP2B (2022-06-29) |
D [auth B] | SCOP2B Superfamily | Voltage-gated potassium channels | 8089819 | 3000023 | SCOP2B (2022-06-29) |
D [auth B] | SCOP2B Superfamily | Ankyrin repeat | 8089700 | 3000154 | SCOP2B (2022-06-29) |
C [auth F] | SCOP2B Superfamily | EF-hand | 8039032 | 3001983 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
E [auth C] | Ank_2 | e6o20C1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: Ankyrin repeat (From Topology) | T: Ankyrin repeat | F: Ank_2 | ECOD (1.6) |
E [auth C] | Ion_trans | e6o20C2 | A: alpha complex topology | X: Voltage-gated ion channels (From Topology) | H: Voltage-gated ion channels (From Topology) | T: Voltage-gated ion channels | F: Ion_trans | ECOD (1.6) |
F [auth D] | Ank_2 | e6o20D2 | A: alpha superhelices | X: Repetitive alpha hairpins | H: Ankyrin repeat (From Topology) | T: Ankyrin repeat | F: Ank_2 | ECOD (1.6) |
F [auth D] | Ion_trans | e6o20D1 | A: alpha complex topology | X: Voltage-gated ion channels (From Topology) | H: Voltage-gated ion channels (From Topology) | T: Voltage-gated ion channels | F: Ion_trans | ECOD (1.6) |
D [auth B] | Ank_2 | e6o20B2 | A: alpha superhelices | X: Repetitive alpha hairpins | H: Ankyrin repeat (From Topology) | T: Ankyrin repeat | F: Ank_2 | ECOD (1.6) |
D [auth B] | Ion_trans | e6o20B1 | A: alpha complex topology | X: Voltage-gated ion channels (From Topology) | H: Voltage-gated ion channels (From Topology) | T: Voltage-gated ion channels | F: Ion_trans | ECOD (1.6) |
C [auth F] | EF-hand_7_8 | e6o20F2 | A: alpha arrays | X: EF-hand | H: EF-hand-related | T: EF-hand | F: EF-hand_7_8 | ECOD (1.6) |
C [auth F] | EF-hand_7_5 | e6o20F1 | A: alpha arrays | X: EF-hand | H: EF-hand-related | T: EF-hand | F: EF-hand_7_5 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 1.25.40.20 | Mainly Alpha | Alpha Horseshoe | Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat | Ankyrin repeat-containing domain | CATH (utative) |
E [auth C] | 1.25.40.20 | Mainly Alpha | Alpha Horseshoe | Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat | Ankyrin repeat-containing domain | CATH (utative) |
F [auth D] | 1.25.40.20 | Mainly Alpha | Alpha Horseshoe | Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat | Ankyrin repeat-containing domain | CATH (utative) |
D [auth B] | 1.25.40.20 | Mainly Alpha | Alpha Horseshoe | Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat | Ankyrin repeat-containing domain | CATH (utative) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A, B [auth E], D [auth B], E [auth C], F [auth D] | PF12796 | Ankyrin repeats (3 copies) (Ank_2) | Ankyrin repeats (3 copies) | - | Repeat |
A, B [auth E], D [auth B], E [auth C], F [auth D] | PF00023 | Ankyrin repeat (Ank) | Ankyrin repeat | - | Repeat |
A, B [auth E], D [auth B], E [auth C], F [auth D] | PF00520 | Ion transport protein (Ion_trans) | Ion transport protein | - | Family |
C [auth F] | PF13499 | EF-hand domain pair (EF-hand_7) | EF-hand domain pair | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Membrane Protein Annotation: OPM OPM Database Homepage
Chains | External Link | Type | Class | Superfamily | Family |
---|---|---|---|---|---|
OPM | Transmembrane | Alpha-helical polytopic | Ion channel (VIC) superfamily | Transient receptor potential channels |
Membrane Protein Annotation: PDBTM PDBTM Database Homepage
Chains | External Link | Comment |
---|---|---|
PDBTM | Annotated as membrane protein by PDBTM |
Membrane Protein Annotation: MemProtMD MemProtMD Database Homepage
Chains | External Link | Comment |
---|---|---|
MemProtMD | Annotated as membrane protein by MemProtMD |