6QCM | pdb_00006qcm

Cryo em structure of the Listeria stressosome

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
ZA [auth f]	SCOP2B Superfamily	SpoIIaa-like	8100356	3001065	SCOP2B (2022-06-29)
YA [auth e]	SCOP2B Superfamily	SpoIIaa-like	8100356	3001065	SCOP2B (2022-06-29)
XA [auth d]	SCOP2B Superfamily	SpoIIaa-like	8100356	3001065	SCOP2B (2022-06-29)
WA [auth c]	SCOP2B Superfamily	SpoIIaa-like	8100356	3001065	SCOP2B (2022-06-29)
VA [auth b]	SCOP2B Superfamily	SpoIIaa-like	8100356	3001065	SCOP2B (2022-06-29)
UA [auth a]	SCOP2B Superfamily	SpoIIaa-like	8100356	3001065	SCOP2B (2022-06-29)
TA [auth S]	SCOP2B Superfamily	SpoIIaa-like	8100356	3001065	SCOP2B (2022-06-29)
SA [auth R]	SCOP2B Superfamily	SpoIIaa-like	8100356	3001065	SCOP2B (2022-06-29)
RA [auth O]	SCOP2B Superfamily	SpoIIaa-like	8100356	3001065	SCOP2B (2022-06-29)
QA [auth N]	SCOP2B Superfamily	SpoIIaa-like	8100356	3001065	SCOP2B (2022-06-29)
PA [auth J]	SCOP2B Superfamily	SpoIIaa-like	8100356	3001065	SCOP2B (2022-06-29)
OA [auth I]	SCOP2B Superfamily	SpoIIaa-like	8100356	3001065	SCOP2B (2022-06-29)
NA [auth D]	SCOP2B Superfamily	SpoIIaa-like	8100356	3001065	SCOP2B (2022-06-29)
MA [auth C]	SCOP2B Superfamily	SpoIIaa-like	8100356	3001065	SCOP2B (2022-06-29)
LA [auth B]	SCOP2B Superfamily	SpoIIaa-like	8100356	3001065	SCOP2B (2022-06-29)
KA [auth A]	SCOP2B Superfamily	SpoIIaa-like	8100356	3001065	SCOP2B (2022-06-29)
DB [auth j]	SCOP2B Superfamily	SpoIIaa-like	8100356	3001065	SCOP2B (2022-06-29)
CB [auth i]	SCOP2 Family	Anti-sigma factor antagonist SpoIIaa	8100355	4003567	SCOP2 (2022-06-29)
CB [auth i]	SCOP2 Superfamily	SpoIIaa-like	8100356	3001065	SCOP2 (2022-06-29)
BB [auth h]	SCOP2B Superfamily	SpoIIaa-like	8100356	3001065	SCOP2B (2022-06-29)
AB [auth g]	SCOP2B Superfamily	SpoIIaa-like	8100356	3001065	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
FB [auth CD]	IstB_IS21	e6qcmCD01	A: beta barrels	X: Ribonuclease H-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: IstB_IS21	ECOD (v294.2)
EB [auth AD]		e6qcmAD1	A: beta barrels	X: Ten stranded beta/alpha barrel	H: Ten stranded beta/alpha barrel	T: Ten stranded beta/alpha barrel	F:	ECOD (v294.2)
ZA [auth f]		e6qcmf1	A: beta barrels	X: Ten stranded beta/alpha barrel	H: Ten stranded beta/alpha barrel	T: Ten stranded beta/alpha barrel	F:	ECOD (v294.2)
YA [auth e]		e6qcme1	A: beta barrels	X: Ten stranded beta/alpha barrel	H: Ten stranded beta/alpha barrel	T: Ten stranded beta/alpha barrel	F:	ECOD (v294.2)
XA [auth d]		e6qcmd1	A: beta barrels	X: Ten stranded beta/alpha barrel	H: Ten stranded beta/alpha barrel	T: Ten stranded beta/alpha barrel	F:	ECOD (v294.2)
WA [auth c]		e6qcmc1	A: beta barrels	X: Ten stranded beta/alpha barrel	H: Ten stranded beta/alpha barrel	T: Ten stranded beta/alpha barrel	F:	ECOD (v294.2)
VA [auth b]		e6qcmb1	A: beta barrels	X: Ten stranded beta/alpha barrel	H: Ten stranded beta/alpha barrel	T: Ten stranded beta/alpha barrel	F:	ECOD (v294.2)
UA [auth a]		e6qcma1	A: beta barrels	X: Ten stranded beta/alpha barrel	H: Ten stranded beta/alpha barrel	T: Ten stranded beta/alpha barrel	F:	ECOD (v294.2)
TA [auth S]		e6qcmS1	A: beta barrels	X: Ten stranded beta/alpha barrel	H: Ten stranded beta/alpha barrel	T: Ten stranded beta/alpha barrel	F:	ECOD (v294.2)
SA [auth R]		e6qcmR1	A: beta barrels	X: Ten stranded beta/alpha barrel	H: Ten stranded beta/alpha barrel	T: Ten stranded beta/alpha barrel	F:	ECOD (v294.2)
RA [auth O]		e6qcmO1	A: beta barrels	X: Ten stranded beta/alpha barrel	H: Ten stranded beta/alpha barrel	T: Ten stranded beta/alpha barrel	F:	ECOD (v294.2)
QA [auth N]		e6qcmN1	A: beta barrels	X: Ten stranded beta/alpha barrel	H: Ten stranded beta/alpha barrel	T: Ten stranded beta/alpha barrel	F:	ECOD (v294.2)
PA [auth J]		e6qcmJ1	A: beta barrels	X: Ten stranded beta/alpha barrel	H: Ten stranded beta/alpha barrel	T: Ten stranded beta/alpha barrel	F:	ECOD (v294.2)
OA [auth I]		e6qcmI1	A: beta barrels	X: Ten stranded beta/alpha barrel	H: Ten stranded beta/alpha barrel	T: Ten stranded beta/alpha barrel	F:	ECOD (v294.2)
NA [auth D]		e6qcmD1	A: beta barrels	X: Ten stranded beta/alpha barrel	H: Ten stranded beta/alpha barrel	T: Ten stranded beta/alpha barrel	F:	ECOD (v294.2)
MA [auth C]		e6qcmC1	A: beta barrels	X: Ten stranded beta/alpha barrel	H: Ten stranded beta/alpha barrel	T: Ten stranded beta/alpha barrel	F:	ECOD (v294.2)
LA [auth B]		e6qcmB1	A: beta barrels	X: Ten stranded beta/alpha barrel	H: Ten stranded beta/alpha barrel	T: Ten stranded beta/alpha barrel	F:	ECOD (v294.2)
KA [auth A]		e6qcmA1	A: beta barrels	X: Ten stranded beta/alpha barrel	H: Ten stranded beta/alpha barrel	T: Ten stranded beta/alpha barrel	F:	ECOD (v294.2)
DB [auth j]		e6qcmj1	A: beta barrels	X: Ten stranded beta/alpha barrel	H: Ten stranded beta/alpha barrel	T: Ten stranded beta/alpha barrel	F:	ECOD (v294.2)
CB [auth i]		e6qcmi1	A: beta barrels	X: Ten stranded beta/alpha barrel	H: Ten stranded beta/alpha barrel	T: Ten stranded beta/alpha barrel	F:	ECOD (v294.2)
BB [auth h]		e6qcmh1	A: beta barrels	X: Ten stranded beta/alpha barrel	H: Ten stranded beta/alpha barrel	T: Ten stranded beta/alpha barrel	F:	ECOD (v294.2)
AB [auth g]		e6qcmg1	A: beta barrels	X: Ten stranded beta/alpha barrel	H: Ten stranded beta/alpha barrel	T: Ten stranded beta/alpha barrel	F:	ECOD (v294.2)
C [auth CB]	IstB_IS21	e6qcmCB01	A: beta barrels	X: Ribonuclease H-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: IstB_IS21	ECOD (v294.2)
A [auth AB]	IstB_IS21	e6qcmAB01	A: beta barrels	X: Ribonuclease H-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: IstB_IS21	ECOD (v294.2)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
FB [auth CD], GB [auth FD], HB [auth HD]	PF01740	STAS domain (STAS)	STAS domain	The STAS (after Sulphate Transporter and AntiSigma factor antagonist) domain is found in the C terminal region of Sulphate transporters and bacterial antisigma factor antagonists. It has been suggested that this domain may have a general NTP binding ...	The STAS (after Sulphate Transporter and AntiSigma factor antagonist) domain is found in the C terminal region of Sulphate transporters and bacterial antisigma factor antagonists. It has been suggested that this domain may have a general NTP binding function [2].	Domain
EB [auth AD]	PF01740	STAS domain (STAS)	STAS domain	The STAS (after Sulphate Transporter and AntiSigma factor antagonist) domain is found in the C terminal region of Sulphate transporters and bacterial antisigma factor antagonists. It has been suggested that this domain may have a general NTP binding ...	The STAS (after Sulphate Transporter and AntiSigma factor antagonist) domain is found in the C terminal region of Sulphate transporters and bacterial antisigma factor antagonists. It has been suggested that this domain may have a general NTP binding function [2].	Domain
AB [auth g], BB [auth h], CB [auth i], DB [auth j], KA [auth A], AB [auth g], BB [auth h], CB [auth i], DB [auth j], KA [auth A], LA [auth B], MA [auth C], NA [auth D], OA [auth I], PA [auth J], QA [auth N], RA [auth O], SA [auth R], TA [auth S], UA [auth a], VA [auth b], WA [auth c], XA [auth d], YA [auth e], ZA [auth f]	PF01740	STAS domain (STAS)	STAS domain	The STAS (after Sulphate Transporter and AntiSigma factor antagonist) domain is found in the C terminal region of Sulphate transporters and bacterial antisigma factor antagonists. It has been suggested that this domain may have a general NTP binding ...	The STAS (after Sulphate Transporter and AntiSigma factor antagonist) domain is found in the C terminal region of Sulphate transporters and bacterial antisigma factor antagonists. It has been suggested that this domain may have a general NTP binding function [2].	Domain
C [auth CB], D [auth DB], F [auth E], H [auth F], L [auth GB], C [auth CB], D [auth DB], F [auth E], H [auth F], L [auth GB], O [auth IB]	PF01740	STAS domain (STAS)	STAS domain	The STAS (after Sulphate Transporter and AntiSigma factor antagonist) domain is found in the C terminal region of Sulphate transporters and bacterial antisigma factor antagonists. It has been suggested that this domain may have a general NTP binding ...	The STAS (after Sulphate Transporter and AntiSigma factor antagonist) domain is found in the C terminal region of Sulphate transporters and bacterial antisigma factor antagonists. It has been suggested that this domain may have a general NTP binding function [2].	Domain
A [auth AB], AA [auth T], B [auth BC], BA [auth TB], CA [auth U], A [auth AB], AA [auth T], B [auth BC], BA [auth TB], CA [auth U], DA [auth UB], E [auth DC], EA [auth V], FA [auth VB], G [auth EB], GA [auth W], HA [auth X], I [auth FA], IA [auth Y], J [auth FB], JA [auth Z], K [auth FC], M [auth GC], N [auth HC], P [auth IC], Q [auth K], R [auth KB], S [auth L], T [auth LB], U [auth M], V [auth OB], W [auth P], X [auth PB], Y [auth Q], Z [auth SB]	PF01740	STAS domain (STAS)	STAS domain	The STAS (after Sulphate Transporter and AntiSigma factor antagonist) domain is found in the C terminal region of Sulphate transporters and bacterial antisigma factor antagonists. It has been suggested that this domain may have a general NTP binding ...	The STAS (after Sulphate Transporter and AntiSigma factor antagonist) domain is found in the C terminal region of Sulphate transporters and bacterial antisigma factor antagonists. It has been suggested that this domain may have a general NTP binding function [2].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
FB [auth CD], GB [auth FD], HB [auth HD]	RsbR protein	oxygen binding binding small molecule binding tetrapyrrole binding heme binding	-	-
EB [auth AD]	RsbR protein,RsbR protein	oxygen binding binding small molecule binding tetrapyrrole binding heme binding	-	-
AB [auth g], BB [auth h], CB [auth i], DB [auth j], KA [auth A], AB [auth g], BB [auth h], CB [auth i], DB [auth j], KA [auth A], LA [auth B], MA [auth C], NA [auth D], OA [auth I], PA [auth J], QA [auth N], RA [auth O], SA [auth R], TA [auth S], UA [auth a], VA [auth b], WA [auth c], XA [auth d], YA [auth e], ZA [auth f]	RsbS protein	-	-	-
C [auth CB], D [auth DB], F [auth E], H [auth F], L [auth GB], C [auth CB], D [auth DB], F [auth E], H [auth F], L [auth GB], O [auth IB]	RsbR protein	oxygen binding binding small molecule binding tetrapyrrole binding heme binding	-	-
A [auth AB], AA [auth T], B [auth BC], BA [auth TB], CA [auth U], A [auth AB], AA [auth T], B [auth BC], BA [auth TB], CA [auth U], DA [auth UB], E [auth DC], EA [auth V], FA [auth VB], G [auth EB], GA [auth W], HA [auth X], I [auth FA], IA [auth Y], J [auth FB], JA [auth Z], K [auth FC], M [auth GC], N [auth HC], P [auth IC], Q [auth K], R [auth KB], S [auth L], T [auth LB], U [auth M], V [auth OB], W [auth P], X [auth PB], Y [auth Q], Z [auth SB]	RsbR protein	oxygen binding binding small molecule binding tetrapyrrole binding heme binding	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
FB [auth CD], GB [auth FD], HB [auth HD]	IPR036513	STAS domain superfamily	Homologous Superfamily
FB [auth CD], GB [auth FD], HB [auth HD]	IPR014792	RsbS co-antagonist protein RsbRA N-terminal domain	Domain
FB [auth CD], GB [auth FD], HB [auth HD]	IPR002645	STAS domain	Domain
FB [auth CD], GB [auth FD], HB [auth HD]	IPR012292	Globin/Protoglobin	Homologous Superfamily
FB [auth CD], GB [auth FD], HB [auth HD]	IPR051932	Bacterial Stress Response Regulators	Family
EB [auth AD]	IPR036513	STAS domain superfamily	Homologous Superfamily
EB [auth AD]	IPR014792	RsbS co-antagonist protein RsbRA N-terminal domain	Domain
EB [auth AD]	IPR002645	STAS domain	Domain
EB [auth AD]	IPR012292	Globin/Protoglobin	Homologous Superfamily
EB [auth AD]	IPR051932	Bacterial Stress Response Regulators	Family
AB [auth g], BB [auth h], CB [auth i], DB [auth j], KA [auth A], AB [auth g], BB [auth h], CB [auth i], DB [auth j], KA [auth A], LA [auth B], MA [auth C], NA [auth D], OA [auth I], PA [auth J], QA [auth N], RA [auth O], SA [auth R], TA [auth S], UA [auth a], VA [auth b], WA [auth c], XA [auth d], YA [auth e], ZA [auth f]	IPR036513	STAS domain superfamily	Homologous Superfamily
AB [auth g], BB [auth h], CB [auth i], DB [auth j], KA [auth A], AB [auth g], BB [auth h], CB [auth i], DB [auth j], KA [auth A], LA [auth B], MA [auth C], NA [auth D], OA [auth I], PA [auth J], QA [auth N], RA [auth O], SA [auth R], TA [auth S], UA [auth a], VA [auth b], WA [auth c], XA [auth d], YA [auth e], ZA [auth f]	IPR002645	STAS domain	Domain
AB [auth g], BB [auth h], CB [auth i], DB [auth j], KA [auth A], AB [auth g], BB [auth h], CB [auth i], DB [auth j], KA [auth A], LA [auth B], MA [auth C], NA [auth D], OA [auth I], PA [auth J], QA [auth N], RA [auth O], SA [auth R], TA [auth S], UA [auth a], VA [auth b], WA [auth c], XA [auth d], YA [auth e], ZA [auth f]	IPR051932	Bacterial Stress Response Regulators	Family
C [auth CB], D [auth DB], F [auth E], H [auth F], L [auth GB], C [auth CB], D [auth DB], F [auth E], H [auth F], L [auth GB], O [auth IB]	IPR036513	STAS domain superfamily	Homologous Superfamily
C [auth CB], D [auth DB], F [auth E], H [auth F], L [auth GB], C [auth CB], D [auth DB], F [auth E], H [auth F], L [auth GB], O [auth IB]	IPR014792	RsbS co-antagonist protein RsbRA N-terminal domain	Domain
C [auth CB], D [auth DB], F [auth E], H [auth F], L [auth GB], C [auth CB], D [auth DB], F [auth E], H [auth F], L [auth GB], O [auth IB]	IPR002645	STAS domain	Domain
C [auth CB], D [auth DB], F [auth E], H [auth F], L [auth GB], C [auth CB], D [auth DB], F [auth E], H [auth F], L [auth GB], O [auth IB]	IPR012292	Globin/Protoglobin	Homologous Superfamily
C [auth CB], D [auth DB], F [auth E], H [auth F], L [auth GB], C [auth CB], D [auth DB], F [auth E], H [auth F], L [auth GB], O [auth IB]	IPR051932	Bacterial Stress Response Regulators	Family
A [auth AB], AA [auth T], B [auth BC], BA [auth TB], CA [auth U], A [auth AB], AA [auth T], B [auth BC], BA [auth TB], CA [auth U], DA [auth UB], E [auth DC], EA [auth V], FA [auth VB], G [auth EB], GA [auth W], HA [auth X], I [auth FA], IA [auth Y], J [auth FB], JA [auth Z], K [auth FC], M [auth GC], N [auth HC], P [auth IC], Q [auth K], R [auth KB], S [auth L], T [auth LB], U [auth M], V [auth OB], W [auth P], X [auth PB], Y [auth Q], Z [auth SB]	IPR036513	STAS domain superfamily	Homologous Superfamily
A [auth AB], AA [auth T], B [auth BC], BA [auth TB], CA [auth U], A [auth AB], AA [auth T], B [auth BC], BA [auth TB], CA [auth U], DA [auth UB], E [auth DC], EA [auth V], FA [auth VB], G [auth EB], GA [auth W], HA [auth X], I [auth FA], IA [auth Y], J [auth FB], JA [auth Z], K [auth FC], M [auth GC], N [auth HC], P [auth IC], Q [auth K], R [auth KB], S [auth L], T [auth LB], U [auth M], V [auth OB], W [auth P], X [auth PB], Y [auth Q], Z [auth SB]	IPR014792	RsbS co-antagonist protein RsbRA N-terminal domain	Domain
A [auth AB], AA [auth T], B [auth BC], BA [auth TB], CA [auth U], A [auth AB], AA [auth T], B [auth BC], BA [auth TB], CA [auth U], DA [auth UB], E [auth DC], EA [auth V], FA [auth VB], G [auth EB], GA [auth W], HA [auth X], I [auth FA], IA [auth Y], J [auth FB], JA [auth Z], K [auth FC], M [auth GC], N [auth HC], P [auth IC], Q [auth K], R [auth KB], S [auth L], T [auth LB], U [auth M], V [auth OB], W [auth P], X [auth PB], Y [auth Q], Z [auth SB]	IPR002645	STAS domain	Domain
A [auth AB], AA [auth T], B [auth BC], BA [auth TB], CA [auth U], A [auth AB], AA [auth T], B [auth BC], BA [auth TB], CA [auth U], DA [auth UB], E [auth DC], EA [auth V], FA [auth VB], G [auth EB], GA [auth W], HA [auth X], I [auth FA], IA [auth Y], J [auth FB], JA [auth Z], K [auth FC], M [auth GC], N [auth HC], P [auth IC], Q [auth K], R [auth KB], S [auth L], T [auth LB], U [auth M], V [auth OB], W [auth P], X [auth PB], Y [auth Q], Z [auth SB]	IPR012292	Globin/Protoglobin	Homologous Superfamily
A [auth AB], AA [auth T], B [auth BC], BA [auth TB], CA [auth U], A [auth AB], AA [auth T], B [auth BC], BA [auth TB], CA [auth U], DA [auth UB], E [auth DC], EA [auth V], FA [auth VB], G [auth EB], GA [auth W], HA [auth X], I [auth FA], IA [auth Y], J [auth FB], JA [auth Z], K [auth FC], M [auth GC], N [auth HC], P [auth IC], Q [auth K], R [auth KB], S [auth L], T [auth LB], U [auth M], V [auth OB], W [auth P], X [auth PB], Y [auth Q], Z [auth SB]	IPR051932	Bacterial Stress Response Regulators	Family

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.