7D51
Crystal structure of a truly knotted protein: cyclized YibK from Haemophilus influenzae
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | SpoU_methylase | e7d51A1 | A: a/b three-layered sandwiches | X: alpha/beta knot (From Topology) | H: alpha/beta knot (From Topology) | T: alpha/beta knot | F: SpoU_methylase | ECOD (1.6) |
B | SpoU_methylase | e7d51B1 | A: a/b three-layered sandwiches | X: alpha/beta knot (From Topology) | H: alpha/beta knot (From Topology) | T: alpha/beta knot | F: SpoU_methylase | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00588 | SpoU rRNA Methylase family (SpoU_methylase) | SpoU rRNA Methylase family | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR001537 | tRNA/rRNA methyltransferase, SpoU type | Domain | |
IPR029026 | tRNA (guanine-N1-)-methyltransferase, N-terminal | Homologous Superfamily | |
IPR029028 | Alpha/beta knot methyltransferases | Homologous Superfamily | |
IPR016914 | tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL | Family |