1D1O
COOPERATIVITY IN EF-HAND CA2+-BINDING PROTEINS: EVIDENCE OF SITE-SITE COMMUNICATION FROM BINDING-INDUCED CHANGES IN STRUCTURE AND DYNAMICS OF N56A CALBINDIN D9K
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D NOESY | 4 MM N56A-CALBINDIN D9K | 0 | 6.0 | AMBIENT | 300 | ||
2 | 3D_15N-SEPARATED_NOESY | 4 MM 15N-LABELED N56A-CALBINDIN D9K; | 0 | 6.0 | AMBIENT | 300 | ||
3 | HSQC-J | 4 MM 15N-LABELED N56A-CALBINDIN D9K; | 0 | 6.0 | AMBIENT | 300 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AMX | 500 |
2 | Bruker | DRX | 600 |
3 | Varian | INOVA | 600 |
NMR Refinement | ||
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Method | Details | Software |
DISTANCE GEOMETRY FOLLOWED BY SIMULATED ANNEALING | NMR REFINEMENT WAS BASED ON A TOTAL OF 910 NOE-DERIVED DISTANCE CONSTRAINTS AND 78 TORSION ANGLE CONSTRAINTS. SIMULATED ANNEALING CYCLE OF 20 PS HEATING TO 1200 K. | Felix |
NMR Ensemble Information | |
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Conformer Selection Criteria | STRUCTURES WITH ACCEPTABLE MOLECULAR ENEGIES WERE ORDERED BY LEAST RESTRAINT VIOLATIONS. THE 24 BEST CONFORMERS WERE SELECTED TO FACILITATE COMPARISON TO PREVIOUS STRUCTURES OF THE PROTEIN AND BECAUSE THIS SURPASSES THE STATISTICAL REQUIREMENT TO REPRESENT ALL OF CONFORMATIONAL SPACE CONSISTENT WITH THE DATA. |
Conformers Calculated Total Number | 50 |
Conformers Submitted Total Number | 24 |
Representative Model | 1 (closest to the average) |
Additional NMR Experimental Information | |
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Details | 1H RESONANCE ASIGNMENTS WERE REPORTED IN THE PROTEIN SCIENCE PAPER BY WIMBERLY ET AL. A 3D 15N SPARATED TOCSY WAS RECORDED TO CONFIRM THESE ASSIGNMENTS AND ASSIGN THE 15N RESONANCES. |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | structure solution | Felix | 97.0 | MSI, SAN DIEGO, CA |
2 | structure solution | DIANA | 2.8 | GUNTERT, BRAUN, BILLETER, WUTHRICH |
3 | refinement | Amber | 4.1 | PEARLMAN, CASE, CALDWELL, ROSS, CHEATHAM, FERGUSON, SEIBEL, SINGH, WEINER, KOLLMAN |