1MNO
V68N MYOGLOBIN OXY FORM
X-RAY DIFFRACTION
Crystallization
Crystalization Experiments | ||||
---|---|---|---|---|
ID | Method | pH | Temperature | Details |
1 | 7.1 | 0.1 PHOSPHATE BUFFER PH 7.1 10 MG/ML PROTEIN |
Crystal Properties | |
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Matthews coefficient | Solvent content |
3.46 | 64.46 |
Crystal Data
Unit Cell | |
---|---|
Length ( Å ) | Angle ( ˚ ) |
a = 122.18 | α = 90 |
b = 42.12 | β = 92.62 |
c = 91.56 | γ = 90 |
Symmetry | |
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Space Group | I 1 21 1 |
Diffraction
Diffraction Experiment | ||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ID # | Crystal ID | Scattering Type | Data Collection Temperature | Detector | Detector Type | Details | Collection Date | Monochromator | Protocol | |||||
1 | 1 | x-ray | 150 | IMAGE PLATE | RIGAKU RAXIS | M | SINGLE WAVELENGTH |
Radiation Source | |||||
---|---|---|---|---|---|
ID # | Source | Type | Wavelength List | Synchrotron Site | Beamline |
1 | ROTATING ANODE | RIGAKU RU200 |
Data Collection
Overall | |||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ID # | Resolution (High) | Resolution (Low) | Percent Possible (Observed) | R Merge I (Observed) | R Sym I (Observed) | Net I Over Average Sigma (I) | Redundancy | Number Reflections (All) | Number Reflections (Observed) | Observed Criterion Sigma (F) | Observed Criterion Sigma (I) | B (Isotropic) From Wilson Plot | |||||||
1 | 1.95 | 24 | 95 | 0.048 | 0.048 | 22.3 | 5.4 | 32510 | 26.69 |
Refinement
Statistics | |||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Diffraction ID | Structure Solution Method | Cross Validation method | Resolution (High) | Resolution (Low) | Number Reflections (Observed) | Number Reflections (R-Free) | Percent Reflections (Observed) | R-Work (Depositor) | R-Free (Depositor) | R-Free Selection Details | Mean Isotropic B | ||||||||
X-RAY DIFFRACTION | OTHER | THROUGHOUT | 1.95 | 24 | 32510 | 1637 | 95 | 0.1908 | 0.25 | RANDOM | 32.2 |
Temperature Factor Modeling | ||||||
---|---|---|---|---|---|---|
Anisotropic B[1][1] | Anisotropic B[1][3] | Anisotropic B[2][2] | Anisotropic B[3][3] | |||
4.362 | 2.135 | 1.164 | -5.46 |
RMS Deviations | |
---|---|
Key | Refinement Restraint Deviation |
p_transverse_tor | 39.9 |
p_staggered_tor | 16.3 |
p_scangle_it | 6.419 |
p_mcangle_it | 4.759 |
p_scbond_it | 4.48 |
p_mcbond_it | 3.908 |
p_planar_tor | 3.5 |
p_multtor_nbd | 0.312 |
p_singtor_nbd | 0.204 |
p_chiral_restr | 0.139 |
Non-Hydrogen Atoms Used in Refinement | |
---|---|
Non-Hydrogen Atoms | Number |
Protein Atoms | 2484 |
Nucleic Acid Atoms | |
Solvent Atoms | 449 |
Heterogen Atoms | 90 |
Software
Software | |
---|---|
Software Name | Purpose |
CCP4 | model building |
REFMAC | refinement |
DENZO | data reduction |
CCP4 | data scaling |
CCP4 | phasing |