1P6R
Solution structure of the DNA binding domain of the repressor BlaI.
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D NOESY | U-15N 0.75 mM, phosphate buffer 75 mM pH 7.6, 300 mM KCl 90% H2O, 10% D2O | 90% H2O/10% D2O | 300 mM KCl, 75 mM phosphate sodium | 7.6 | ambient | 298 | |
2 | 3D_13C-separated_NOESY | U-15N-13C 0.50 mM, phosphate buffer 75 mM pH 7.6, 300 mM KCl 90% H2O, 10% D2O | 90% H2O/10% D2O | 300 mM KCl, 75 mM phosphate sodium | 7.6 | ambient | 298 | |
3 | 3D_15N-separated_NOESY | U-15N 0.75 mM, phosphate buffer 75 mM pH 7.6, 300 mM KCl 90% H2O, 10% D2O | 90% H2O/10% D2O | 300 mM KCl, 75 mM phosphate sodium | 7.6 | ambient | 298 | |
4 | 3D-13C-separated NOESY optimized for CH groups | U-15N-13C 0.50 mM, phosphate buffer 75 mM pH 7.6, 300 mM KCl 90% H2O, 10% D2O | 90% H2O/10% D2O | 300 mM KCl, 75 mM phosphate sodium | 7.6 | ambient | 298 | |
5 | 4D 13C-separated-HSQC-NOESY-HSQC | U-15N-13C 0.50 mM, phosphate buffer 75 mM pH 7.6, 300 mM KCl 90% H2O, 10% D2O | 90% H2O/10% D2O | 300 mM KCl, 75 mM phosphate sodium | 7.6 | ambient | 298 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Varian | INOVA | 800 |
2 | Varian | INOVA | 600 |
NMR Refinement | ||
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Method | Details | Software |
simulated annealing, molecular dynamics | For structure calculation, a total of 1252 interproton and 110 dihedral restraints were used. The distance constraints contain 596 intraresidue, 205 sequential, 87 medium-range, 145 long-range, and 219 ambiguous correlations. | Felix |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 80 |
Conformers Submitted Total Number | 19 |
Representative Model | 19 (lowest energy) |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | processing | Felix | 2000 | Accelrys |
2 | structure solution | Discover | 2000 | Accelrys |
3 | refinement | Amber | 1991 | Pearlman |
4 | data analysis | TALOS | 1999 | Cornilescu |