1UC6
Solution Structure of the Carboxyl Terminal Domain of the Ciliary Neurotrophic Factor Receptor
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 3D_15N-separated_NOESY | 2mM CNTFR-BC U-15N; 100mM NaCl, 10mM sodium phosphate, 0.1mM EDTA | 90% H2O, 10% D2O, pH 6.5 | 100mM NaCl, 10mM sodium phosphate, 0.1mM EDTA | 6.5 | ambient | 298 | |
2 | 3D_13C-separated_NOESY | 1.3mM CNTFR-BC U-15N,13C; 100mM NaCl, 10mM sodium phosphate, 0.1mM EDTA | 90% H2O, 10% D2O, pH 6.5 | 100mM NaCl, 10mM sodium phosphate, 0.1mM EDTA | 6.5 | ambient | 298 | |
3 | HNHA | 1.3mM CNTFR-BC U-15N,13C; 100mM NaCl, 10mM sodium phosphate, 0.1mM EDTA | 90% H2O, 10% D2O, pH 6.5 | 100mM NaCl, 10mM sodium phosphate, 0.1mM EDTA | 6.5 | ambient | 298 | |
4 | nJ-HMQC | 2mM CNTFR-BC U-15N; 100mM NaCl, 10mM sodium phosphate, 0.1mM EDTA | 90% H2O, 10% D2O, pH 6.5 | 100mM NaCl, 10mM sodium phosphate, 0.1mM EDTA | 6.5 | ambient | 298 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Varian | INOVA | 750 |
2 | Varian | INOVA | 500 |
NMR Refinement | ||
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Method | Details | Software |
simulated annealing | Following identification of the global fold from manual inspection of the nuclear Overhauser effect spectroscopy data, ambiguous NOE restraints were resolved using the iterative ARIA method (Nilges et al., 1997) and the structure was determined by simulated annealing using the CNS package. | VNMR |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 21 |
Representative Model | 1 (minimized average structure) |
Additional NMR Experimental Information | |
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Details | For determination of hydrogen bonds, amide protons exchanging slowly with deuterons were identified by time course 1H-15N HSQC experiments on a freeze-dried 15N-labelled sample of BC dissolved in D2O buffer. |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | collection | VNMR | 6.1C | Varian |
2 | processing | NMRPipe | 2.0 | F. Delaglio |
3 | data analysis | PIPP | 1.0 | Garrett D |
4 | data analysis | Sparky | 1.06 | Goddard, T. D |
5 | structure solution | ARIA | 1.1 | Nilges, M. |
6 | structure solution | CNS | 1.1 | Brunger, A.T. |
7 | refinement | CNS | 1.1 |