1DUF
THE NMR STRUCTURE OF DNA DODECAMER DETERMINED IN AQUEOUS DILUTE LIQUID CRYSTALLINE PHASE
SOLUTION NMR
NMR Experiment | ||||||||
---|---|---|---|---|---|---|---|---|
Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 13C-HSQC-J-MODULATED | 0.5 MM DUPLEX DNA, 40MM SODIUM PHOSPHATE, PH 7.0 | 40 mM | 7.00 | 1 atm | 308.00 | ||
2 | COSY | 0.5 MM DUPLEX DNA, 40MM SODIUM PHOSPHATE, PH 7.0 | 40 mM | 7.00 | 1 atm | 308.00 | ||
3 | 13C-HSQC-F1- COUPLED | 0.5 MM DUPLEX DNA, 40MM SODIUM PHOSPHATE, PH 7.0 | 40 mM | 7.00 | 1 atm | 308.00 | ||
4 | 15N-HSQC-F1- COUPLED | 0.5 MM DUPLEX DNA, 40MM SODIUM PHOSPHATE, PH 7.0 | 40 mM | 7.00 | 1 atm | 308.00 | ||
5 | 2D NOESY | 0.5 MM DUPLEX DNA, 40MM SODIUM PHOSPHATE, PH 7.0 | 40 mM | 7.00 | 1 atm | 308.00 |
NMR Spectrometer Information | |||
---|---|---|---|
Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | DMX | 600 |
2 | Bruker | DMX | 750 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
SIMULATED ANNEALING, MOLECULAR DYNAMICS | THE STRUCTURE IS BASED ON A TOTAL OF 162 NOE, 32 HYDROGEN BOND, AND 156 DIHEDRAL RESTRAINTS; AS WELL AS 198 CH AND 10 NH ONE-BOND DIPOLAR COUPLING RESTRAINTS IN ADDITION TO 200 APPROXIMATE PROTON -PROTON DIPOLAR COUPLINGS | X-PLOR |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 20 |
Conformers Submitted Total Number | 5 |
Representative Model | 1 (n/a) |
Additional NMR Experimental Information | |
---|---|
Details | THIS STRUCTURE WAS DETERMINED USING A COMPLETE SET OF HOMONUCLEAR AND HETERONUCLEAR DIPOLAR COUPLINGS IN LIQUID CRYSTAL |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | refinement | X-PLOR | 3.841 | BRUNGER |
2 | structure solution | NMRPIPE 1.7 REV | 1999.039.11.31 | |
3 | structure solution | XWINNMR VERSION | 2.4 | |
4 | structure solution | PIPP/CAPP VERSION | 4.2.8 |