1HN6
SOLUTION STRUCTURE OF PLASMODIUM FALCIPARUM APICAL MEMBRANE ANTIGEN 1 (RESIDUES 436-545)
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 3D_13C-separated_NOESY | 1mM Pf AMA1 U-15N, 1mM Pf AMA1 U-15N, 13C | 90% H2O/10% D2O | 0 | 3.4 | ambient | 303 | |
2 | 3D_15N-separated_NOESY | 1mM Pf AMA1 U-15N, 13C | 90% H2O/10% D2O | |||||
3 | HNHA |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AMX | 500 |
2 | Bruker | DRX | 600 |
NMR Refinement | ||
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Method | Details | Software |
torsion angle dynamics, simulated annealing, molecular dynamics | The structures are based on a total of 668 NOE derived restraints, six hydrogen bond restraints and 172 dihedral angle restraints. | DYANA |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the least restraint violations, structures with the lowest energy |
Conformers Calculated Total Number | 256 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (closest to the average) |
Additional NMR Experimental Information | |
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Details | Angle information derived from analysis of HNHA, HNHB and 3D NOE data recorded at short mixing times. 1H,13C and 15N chemical shift data used in software program TALOS to calculate additional angles. |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | structure solution | DYANA | 1.5 | Guentert |
2 | refinement | CNS | 1.0 | Bruenger |
3 | processing | XwinNMR | 1.3 | Bruker AG |
4 | data analysis | XEASY | 1.3.13 | Bartels |
5 | data analysis | TALOS | 1999 | Cornilescu |