1Q27
NMR Solution Structure of DR0079: An hypothetical Nudix protein from D. radiodurans
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 3D_15N-separated_NOESY | ~2 mM DR0079; U-15N, 13C; 100 mM KCl, 20 mM potassium phosphate, 2 mM DTT, pH 7.1 | 90% H2O/10% D2O | 100 mM KCl; 20 mM Potassium phosphate | 7.1 | ambient | 298 | |
2 | 3D_13C-separated_NOESY | ~2 mM DR0079; U-15N, 13C; 100 mM KCl, 20 mM potassium phosphate, 2 mM DTT, pH 7.1 | 90% H2O/10% D2O | 100 mM KCl; 20 mM Potassium phosphate | 7.1 | ambient | 298 | |
3 | 4D_13C-separated_NOESY | ~2 mM DR0079; U-15N, 13C; 100 mM KCl, 20 mM potassium phosphate, 2 mM DTT, pH 7.1 | 90% H2O/10% D2O | 100 mM KCl; 20 mM Potassium phosphate | 7.1 | ambient | 298 | |
4 | IPAP-HSQC experiements for RDCs | ~2 mM DR0079; U-15N, 13C; 100 mM KCl, 20 mM potassium phosphate, 2 mM DTT, pH 7.1, pf1 filamentous phage | 90% H2O/10% D2O | 100 mM KCl; 20 mM Potassium phosphate | 7.1 | ambient | 298 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Varian | INOVA | 750 |
2 | Varian | INOVA | 800 |
3 | Varian | INOVA | 600 |
NMR Refinement | ||
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Method | Details | Software |
torsion angle dynamics | DYANA used for initial refinements. CNS used for final structure calculations with RDCs. | DYANA |
NMR Ensemble Information | |
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Conformer Selection Criteria | ten best structures, in terms of total and NOE energies |
Conformers Calculated Total Number | 225 |
Conformers Submitted Total Number | 10 |
Representative Model | 6 (n/a) |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | structure solution | DYANA | 1.5 | Guentert |
2 | structure solution | CNS | 1.1 | Brunger |
3 | processing | Felix | 97 | MSI |
4 | refinement | CNS | 1.1 | Brunger |