1QHO
FIVE-DOMAIN ALPHA-AMYLASE FROM BACILLUS STEAROTHERMOPHILUS, MALTOSE/ACARBOSE COMPLEX
X-RAY DIFFRACTION
Starting Model(s)
Initial Refinement Model(s) | |||
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Type | Source | Accession Code | Details |
experimental model | PDB | 1CDG |
Crystallization
Crystalization Experiments | ||||
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ID | Method | pH | Temperature | Details |
1 | 6 | 19 MG ML-1 ENZYME IN 10MM TRIS-HCL BUFFER PH 6.0, 0.2M NACL, 5MM CACL2. THE WELL SOLUTION CONTAINED 0.9M LI2SO4, 2.5% PEH 1450, 50MM TEA BUFFER (PH 6.5) AND 100MM MALTOSE. 20MM ACARBOSE WAS LATER SOAKED INTO CRYSTALS |
Crystal Properties | |
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Matthews coefficient | Solvent content |
2.87 | 57.21 |
Crystal Data
Unit Cell | |
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Length ( Å ) | Angle ( ˚ ) |
a = 89.82 | α = 90 |
b = 89.82 | β = 90 |
c = 185.75 | γ = 120 |
Symmetry | |
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Space Group | P 31 2 1 |
Diffraction
Diffraction Experiment | ||||||||||||||
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ID # | Crystal ID | Scattering Type | Data Collection Temperature | Detector | Detector Type | Details | Collection Date | Monochromator | Protocol | |||||
1 | 1 | x-ray | 100 | IMAGE PLATE | MARRESEARCH | LONG FOCUSSING MIRRORS | M | SINGLE WAVELENGTH |
Radiation Source | |||||
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ID # | Source | Type | Wavelength List | Synchrotron Site | Beamline |
1 | ROTATING ANODE | RIGAKU RU200 |
Data Collection
Overall | |||||||||||||||||||
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ID # | Resolution (High) | Resolution (Low) | Percent Possible (Observed) | R Merge I (Observed) | Net I Over Average Sigma (I) | Redundancy | Number Reflections (All) | Number Reflections (Observed) | Observed Criterion Sigma (F) | Observed Criterion Sigma (I) | B (Isotropic) From Wilson Plot | ||||||||
1 | 1.7 | 20 | 99.1 | 0.08 | 19.7 | 6.7 | 630805 |
Highest Resolution Shell | |||||||||||||||||||
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ID # | Resolution (High) | Resolution (Low) | Percent Possible (All) | Percent Possible (Observed) | R Merge I (Observed) | Mean I Over Sigma (Observed) | Redundancy | Number Unique Reflections (All) | |||||||||||
1.7 | 1.73 | 97.2 | 0.49 | 3.1 | 4.6 |
Refinement
Statistics | |||||||||||||||||||
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Diffraction ID | Structure Solution Method | Cross Validation method | Starting model | Resolution (High) | Resolution (Low) | Number Reflections (Observed) | Number Reflections (R-Free) | Percent Reflections (Observed) | R-Work (Depositor) | R-Work (DCC) | R-Free (Depositor) | R-Free Selection Details | Mean Isotropic B | ||||||
X-RAY DIFFRACTION | MOLECULAR REPLACEMENT | THROUGHOUT | 1CDG | 1.7 | 20 | 95281 | 1410 | 99.1 | 0.151 | 0.15 | 0.175 | RANDOM |
RMS Deviations | |
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Key | Refinement Restraint Deviation |
p_transverse_tor | 27.4 |
p_staggered_tor | 11.4 |
p_planar_tor | 4.3 |
p_scangle_it | 3 |
p_scbond_it | 2.3 |
p_mcangle_it | 1.5 |
p_mcbond_it | 1.2 |
p_multtor_nbd | 0.24 |
p_singtor_nbd | 0.171 |
p_chiral_restr | 0.095 |
Non-Hydrogen Atoms Used in Refinement | |
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Non-Hydrogen Atoms | Number |
Protein Atoms | 5319 |
Nucleic Acid Atoms | |
Solvent Atoms | 1106 |
Heterogen Atoms | 120 |
Software
Software | |
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Software Name | Purpose |
AMoRE | phasing |
REFMAC | refinement |
DENZO | data reduction |
SCALEPACK | data scaling |