1Y6U
The Structure of the Excisionase (Xis) Protein from Conjugative Transposon Tn916 Provides Insights into the Regulation of Heterobivalent Tyrosine Recombinases
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 3D_13C-separated_NOESY | 1 mM 15N/13C labeled Xis, 30 mM NaOAc, 60 mM NaCl, 93% H2O, 7% D2O | 30 mM NaOAc, pH 4.5, 60 mM NaCl, 93% H2O, 7% D2O | 60 mM NaCl | 4.5 | Ambient | 303 | |
2 | 3D_15N-separated_NOESY | 1 mM 15N/13C labeled Xis, 30 mM NaOAc, 60 mM NaCl, 93% H2O, 7% D2O | 30 mM NaOAc, pH 4.5, 60 mM NaCl, 93% H2O, 7% D2O | 60 mM NaCl | 4.5 | Ambient | 303 | |
3 | 4D_13C/15N-separated_NOESY | 1 mM 15N/13C labeled Xis, 30 mM NaOAc, 60 mM NaCl, 93% H2O, 7% D2O | 30 mM NaOAc, pH 4.5, 60 mM NaCl, 93% H2O, 7% D2O | 60 mM NaCl | 4.5 | Ambient | 303 | |
4 | HNCA-J | 1 mM 15N/13C labeled Xis, 30 mM NaOAc, 60 mM NaCl, 93% H2O, 7% D2O | 30 mM NaOAc, pH 4.5, 60 mM NaCl, 93% H2O, 7% D2O | 60 mM NaCl | 4.5 | Ambient | 303 | |
5 | HNHA | 1 mM 15N/13C labeled Xis, 30 mM NaOAc, 60 mM NaCl, 93% H2O, 7% D2O | 30 mM NaOAc, pH 4.5, 60 mM NaCl, 93% H2O, 7% D2O | 60 mM NaCl | 4.5 | Ambient | 303 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | DRX | 600 |
2 | Bruker | DRX | 500 |
NMR Refinement | ||
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Method | Details | Software |
Hybrid distance geometry and simulated annealing calculations | XwinNMR |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 200 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | collection | XwinNMR | 2.6 | |
2 | processing | X-PLOR | 3.1 | |
3 | processing | NMRPipe | sgi6x | |
4 | data analysis | PIPP | 4.3.5 | |
5 | refinement | XPLOR-NIH |