1YWL
Solution NMR structure of the protein EF2693 from E. faecalis: Northeast Structural Genomics Consortium target EFR36
SOLUTION NMR
| NMR Experiment | ||||||||
|---|---|---|---|---|---|---|---|---|
| Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
| 1 | 3D_15N-separated_NOESY | 5% D2O, 0.02% NaN3, 10mM DTT, 5mM CaCl2, 100mM NaCl, 20mM MES | 5 % D20, 95 % H20 | 100 mM NaCl, 5 mM CaCl2 | 6.5 | 1 atm | 293 | |
| 2 | 3D_13C-separated_NOESY | 5% D2O, 0.02% NaN3, 10mM DTT, 5mM CaCl2, 100mM NaCl, 20mM MES | 5 % D20, 95 % H20 | 100 mM NaCl, 5 mM CaCl2 | 6.5 | 1 atm | 293 | |
| NMR Spectrometer Information | |||
|---|---|---|---|
| Spectrometer | Manufacturer | Model | Field Strength |
| 1 | Bruker | AVANCE | 500 |
| 2 | Varian | INOVA | 600 |
| NMR Refinement | ||
|---|---|---|
| Method | Details | Software |
| torsion angle dynamics simulated annealing | The structures are based on a total of 912 conformationally-restricting noe-derived distance restraints, 216 dihedral restraints and 54 hydrogen bond restraints. | DYANA |
| NMR Ensemble Information | |
|---|---|
| Conformer Selection Criteria | Structures with lowest energy |
| Conformers Calculated Total Number | 56 |
| Conformers Submitted Total Number | 10 |
| Representative Model | 1 (lowest energy) |
| Additional NMR Experimental Information | |
|---|---|
| Details | The structure was determined using triple-resonance NMR spectroscopy. Automatic backbone resonance assignments were made using AutoAssign. Side-chain assignments were made manually. Automatic NOE assignments were made using AutoStructure. Dihedral angle restraints were made using Hyper and Talos. The SPINS database software was used as an integrating agent. PSVS was used to validate structure quality. |
| Computation: NMR Software | ||||
|---|---|---|---|---|
| # | Classification | Version | Software Name | Author |
| 1 | refinement | DYANA | 1.5 | Guentert, et al |
| 2 | structure solution | AutoStructure | 2.0.0 | Huang |
| 3 | data analysis | AutoAssign | 1.14 | Moseley, et al |
| 4 | processing | NMRPipe | 2.1 | Delaglio, et al |
| 5 | collection | VNMR | 6.1B | Varian |
| 6 | collection | XwinNMR | 3.5 | Bruker |
| 7 | structure solution | PdbStat | 4.01 | Tejero and Montelione |
| 8 | structure solution | HYPER | 3.2 | Tejero and Montelione |
| 9 | structure solution | TALOS | 2.1 | Cornilescu, et al |
| 10 | data analysis | SPINS | 5.0 | Baran |
| 11 | refinement | PSVS | 1.0 | Bhattacharya |
