2B1O
Solution Structure of Ca2+-bound DdCAD-1
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 4D_13C/15N-separated_NOESY | 0.5mM DdCAD-1 U-15N, 13C; 5mM CaCl2, 10mM PIPES buffer, 2mM DTT, 0.05mM SODIUM AZIDE, 90% H2O, 10% D2O | 90% H2O/10% D2O | 5mM CaCl2, 0.05mM SODIUM | 6.2 | 1 atm | 303 | |
2 | 3D_15N-separated_NOESY | 0.5mM DdCAD-1 U-15N, 13C; 5mM CaCl2, 10mM PIPES buffer, 2mM DTT, 0.05mM SODIUM AZIDE, 90% H2O, 10% D2O | 90% H2O/10% D2O | 5mM CaCl2, 0.05mM SODIUM | 6.2 | 1 atm | 303 | |
3 | 3D_13C-separated_NOESY | 0.5mM DdCAD-1 U-15N, 13C; 5mM CaCl2, 10mM PIPES buffer, 2mM DTT, 0.05mM SODIUM AZIDE, 90% H2O, 10% D2O | 90% H2O/10% D2O | 5mM CaCl2, 0.05mM SODIUM | 6.2 | 1 atm | 303 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE | 800 |
2 | Bruker | DRX | 500 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
torsion angle dynamics | Energy minimization in Amber force field | NMRPipe |
NMR Ensemble Information | |
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Conformer Selection Criteria | target function |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 10 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | processing | NMRPipe | 2004.126.16.02 | Delaglio |
2 | data analysis | NMRView | 5.2.2.01 | Johnson |
3 | structure solution | CYANA | 1.0.5 | Peter |
4 | refinement | Amber | 7.0 | David |