2HAC
Structure of Zeta-Zeta Transmembrane Dimer
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | gradient-enhanced HNCA | 0.5-1.0 mM disulfide crosslinked zeta-zeta dimer U-15N,U-13C,85%-2H. Sodium dodecyl sulfate (40 mM) and dodecyl phosphocholine (200 mM), 95% H2O, 5% D2O. | 95% H2O/5% D2O | 20 mM sodium phosphate buffer | 7.0 | ambient | 303 | |
2 | 3D_15N-separated_NOESY | 0.5-1.0 mM disulfide crosslinked zeta-zeta dimer U-15N,U-13C. Sodium dodecyl sulfate (40 mM) and dodecyl phosphocholine (200 mM), 95% H2O, 5% D2O. | 95% H2O/5% D2O | 20 mM sodium phosphate buffer | 7.0 | ambient | 303 | |
3 | 3D_15N-separated_NOESY | 0.5-1.0 mM disulfide crosslinked zeta-zeta dimer U-15N,U-13C. Sodium dodecyl sulfate (40 mM) and dodecyl phosphocholine (200 mM), 95% H2O, 5% D2O. | 95% H2O/5% D2O | 20 mM sodium phosphate buffer | 7.0 | ambient | 303 | |
4 | 3D_13C-separated_NOESY | 0.5-1.0 mM disulfide crosslinked zeta-zeta dimer U-15N,U-13C. Sodium dodecyl sulfate (40 mM) and dodecyl phosphocholine (200 mM), 95% H2O, 5% D2O. | 95% H2O/5% D2O | 20 mM sodium phosphate buffer | 7.0 | ambient | 303 | |
5 | 3D_15N-separated_NOESY | 0.5-1.0 mM disulfide crosslinked zeta-zeta dimer, mixed-label. One monomer: U-15N,U-2H. Other monomer: natural abundance isotopes. Sodium dodecyl sulfate (40 mM) and dodecyl phosphocholine (200 mM), 95% H2O, 5% D2O. | 95% H2O/5% D2O | 20 mM sodium phosphate buffer | 7.0 | ambient | 303 | |
6 | standard HSQC and trosy-HSQC for D(NH) couplings; 2D (CA)CONH quantitative JCH experiment for D(CaHa) couplings | 0.5-1.0 mM disulfide crosslinked zeta-zeta dimer U-15N,U-13C. Sodium dodecyl sulfate (40 mM) and dodecyl phosphocholine (200 mM), 95% H2O, 5% D2O. 5% polyacrylamide gel. | 95% H2O/5% D2O | 20 mM sodium phosphate buffer | 7.0 | ambient | 303 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE | 500 |
2 | Bruker | AVANCE | 600 |
NMR Refinement | ||
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Method | Details | Software |
simulated annealing | 426 intramolecular NOE restraints, 46 intermolecular NOE restraints, 42 dihedral angle restraints, 70 residual dipolar coupling restraints. | NMRPipe |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 30 |
Conformers Submitted Total Number | 15 |
Representative Model | 1 (closest to the average) |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | processing | NMRPipe | 1.0 | Frank Delaglio |
2 | data analysis | CARA | 1.5 | Rochus Keller |
3 | refinement | XPLOR-NIH | 2.11 | Charles Schwieters |