2JST
Four-Alpha-Helix Bundle with Designed Anesthetic Binding Pockets II: Halothane Effects on Structure and Dynamics
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-15N HSQC | 0.5 mM [U-13C; U-15N] 4HB | 90% H2O/10% D2O | 4.5 | ambient | 308 | ||
2 | 2D 1H-1H NOESY | 0.5 mM [U-13C; U-15N] 4HB | 90% H2O/10% D2O | 4.5 | ambient | 308 | ||
3 | 3D CBCA(CO)NH | 0.5 mM [U-13C; U-15N] 4HB | 90% H2O/10% D2O | 4.5 | ambient | 308 | ||
4 | 3D HNCACB | 0.5 mM [U-13C; U-15N] 4HB | 90% H2O/10% D2O | 4.5 | ambient | 308 | ||
5 | 3D HNCO | 0.5 mM [U-13C; U-15N] 4HB | 90% H2O/10% D2O | 4.5 | ambient | 308 | ||
6 | 3D HNCA | 0.5 mM [U-13C; U-15N] 4HB | 90% H2O/10% D2O | 4.5 | ambient | 308 | ||
7 | 3D HN(CO)CA | 0.5 mM [U-13C; U-15N] 4HB | 90% H2O/10% D2O | 4.5 | ambient | 308 | ||
8 | 3D 1H-15N NOESY | 0.5 mM [U-13C; U-15N] 4HB | 90% H2O/10% D2O | 4.5 | ambient | 308 | ||
9 | 3D HCCH-COSY | 0.5 mM [U-13C; U-15N] 4HB | 90% H2O/10% D2O | 4.5 | ambient | 308 | ||
10 | R1 | 0.5 mM [U-13C; U-15N] 4HB | 90% H2O/10% D2O | 4.5 | ambient | 308 | ||
11 | R2 | 0.5 mM [U-13C; U-15N] 4HB | 90% H2O/10% D2O | 4.5 | ambient | 308 | ||
12 | Heteronuclear NOE | 0.5 mM [U-13C; U-15N] 4HB | 90% H2O/10% D2O | 4.5 | ambient | 308 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE | 800 |
2 | Bruker | AVANCE | 700 |
3 | Bruker | AVANCE | 600 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
torsion angle dynamics | TopSpin |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | target function |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | collection | TopSpin | 1.3 | Bruker |
2 | processing | NMRPipe | 2.4 Rev 2006.095.11.35 | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax |
3 | data analysis | Sparky | 3.110 | Goddard |
4 | structure solution | CYANA | 2.1 | Guntert, Mumenthaler and Wuthrich |
5 | chemical shift assignment | AutoAssign | 2.2.0 | Zimmerman, Moseley, Kulikowski and Montelione |
6 | refinement | CYANA | 2.1 | Guntert, Mumenthaler and Wuthrich |