2K3P
Solution structure of the C-terminal domain (TUSP1-C) of the egg case silk from Nephila antipodiana
SOLUTION NMR
NMR Experiment | ||||||||
---|---|---|---|---|---|---|---|---|
Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 3D HNCA | 1.5 mM [U-99% 13C; U-99% 15N] TUSP1-C | 90% H2O/10% D2O | 5 | 6.5 | ambient | 308 | |
2 | 3D HN(CO)CA | 1.5 mM [U-99% 13C; U-99% 15N] TUSP1-C | 90% H2O/10% D2O | 5 | 6.5 | ambient | 308 | |
3 | 3D CCH-TOCSY | 1.5 mM [U-99% 13C; U-99% 15N] TUSP1-C | 90% H2O/10% D2O | 5 | 6.5 | ambient | 308 | |
4 | 2D 1H-15N HSQC | 1.5 mM [U-99% 13C; U-99% 15N] TUSP1-C | 90% H2O/10% D2O | 5 | 6.5 | ambient | 308 | |
5 | 2D 1H-13C HSQC | 1.5 mM [U-99% 13C; U-99% 15N] TUSP1-C | 90% H2O/10% D2O | 5 | 6.5 | ambient | 308 | |
6 | 4D NOESY | 1.5 mM [U-99% 13C; U-99% 15N] TUSP1-C | 90% H2O/10% D2O | 5 | 6.5 | ambient | 308 |
NMR Spectrometer Information | |||
---|---|---|---|
Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | DPX | 500 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
torsion angle dynamics | Amber |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 10 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | refinement | Amber | 7 | Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, and Kollm |
2 | processing | NMRPipe | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax | |
3 | data analysis | NMRView | Johnson, One Moon Scientific | |
4 | structural calculation | CYANA | Guntert, Mumenthaler and Wuthrich |