2K4G
Solution Structure of a Peptide Nucleic Acid Duplex, 10 structures
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-1H NOESY | 0.8 MM SS PNA, 10 MM SODIUM PHOSPHATE | 7.0 | AMBIENT | 300 | |||
2 | 2D 1H-1H COSY | 0.8 MM SS PNA, 10 MM SODIUM PHOSPHATE | 7.0 | AMBIENT | 300 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE | 500 |
NMR Refinement | ||
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Method | Details | Software |
SIMULATED ANNEALING, MOLECULAR DYNAMICS IN EXPLICIT SOLVENT | MODEL 1 is the MINIMIZED AVERAGE OF 10 STRUCTURES (MODELS 2 TO 11). STRUCTURES HAVE NO MISSING ATOMS. HOWEVER, REMARK 470 and 610 WERE ADDED AUTOMATICALLY DUE TO PDB CONVENTIONS. | Amber |
NMR Ensemble Information | |
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Conformer Selection Criteria | all calculated structures submitted |
Conformers Calculated Total Number | 11 |
Conformers Submitted Total Number | 11 |
Representative Model | 1 (minimized average structure) |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | refinement | Amber | 9 | CASE, D. ET AL. |
2 | data analysis | Amber | 9 | CASE, D. ET AL. |