2KLY
Solution structure of human ubiquitin conjugating enzyme Ube2g2
SOLUTION NMR
NMR Experiment | ||||||||
---|---|---|---|---|---|---|---|---|
Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 3D_15N-separated_NOESY | 1.0 mM [U-99% 13C; U-99% 15N] Human ubiquitin-conjugating enzyme E2G2 isoform 1, 90% H2O, 10% D2O | 90% H2O/10% D2O | 50mM NaCl | 7.0 | 1 atm | 295 | |
2 | 3D_13C-separated_NOESY | 1.0 mM [U-99% 13C; U-99% 15N] Human ubiquitin-conjugating enzyme E2G2 isoform 1, 90% H2O, 10% D2O | 90% H2O/10% D2O | 50mM NaCl | 7.0 | 1 atm | 295 | |
3 | 2D_NOESY | 1.0 mM [U-99% 13C; U-99% 15N] Human ubiquitin-conjugating enzyme E2G2 isoform 1, 90% H2O, 10% D2O | 90% H2O/10% D2O | 50mM NaCl | 7.0 | 1 atm | 295 | |
4 | 3D HNHA | 1.0 mM [U-99% 13C; U-99% 15N] Human ubiquitin-conjugating enzyme E2G2 isoform 1, 90% H2O, 10% D2O | 90% H2O/10% D2O | 50mM NaCl | 7.0 | 1 atm | 295 | |
5 | IPAP-HSQC | 0.7 mM [U-99% 15N] Human ubiquitin-conjugating enzyme E2G2 isoform 1 | 90% H2O, 10% D2O; 8 mg/ml bacteriophage Pf1 | 50mM NaCl | 7.0 | 1 atm | 295 | |
6 | IPAP-HSQC | 1.0 mM [U-99% 13C; U-99% 15N] Human ubiquitin-conjugating enzyme E2G2 isoform 1 | 90% H2O, 10% D2O; 4.5% stretched polyacrylamide gel | 50mM NaCl | 7.0 | 1 atm | 295 |
NMR Spectrometer Information | |||
---|---|---|---|
Spectrometer | Manufacturer | Model | Field Strength |
1 | Varian | INOVA | 800 |
2 | Bruker | AVANCE II | 600 |
3 | Bruker | AVANCE | 600 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
simulated annealing | Refinement by CNS/ARIA | CNS |
NMR Ensemble Information | |
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Conformer Selection Criteria | 10 structures for lowest energy |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 10 |
Representative Model | 1 (closest to mean) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | refinement | CNS | Brunger A. T. et.al. |