2L42
The solution structure of Rap1 BRCT domain from Saccharomyces cerevisiae
SOLUTION NMR
NMR Experiment | ||||||||
---|---|---|---|---|---|---|---|---|
Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-15N HSQC | 20 mM sodium phosphate-1, 100 mM sodium chloride-2 | 90% H2O/10% D2O | 0.12 | 6.5 | ambient | 298 | |
2 | 3D CBCA(CO)NH | 20 mM sodium phosphate-1, 100 mM sodium chloride-2 | 90% H2O/10% D2O | 0.12 | 6.5 | ambient | 298 | |
3 | 3D C(CO)NH | 20 mM sodium phosphate-1, 100 mM sodium chloride-2 | 90% H2O/10% D2O | 0.12 | 6.5 | ambient | 298 | |
4 | 3D HNCO | 20 mM sodium phosphate-1, 100 mM sodium chloride-2 | 90% H2O/10% D2O | 0.12 | 6.5 | ambient | 298 | |
5 | 3D HNCACB | 20 mM sodium phosphate-1, 100 mM sodium chloride-2 | 90% H2O/10% D2O | 0.12 | 6.5 | ambient | 298 | |
6 | 3D HBHA(CO)NH | 20 mM sodium phosphate-1, 100 mM sodium chloride-2 | 90% H2O/10% D2O | 0.12 | 6.5 | ambient | 298 | |
7 | 3D H(CCO)NH | 20 mM sodium phosphate-1, 100 mM sodium chloride-2 | 90% H2O/10% D2O | 0.12 | 6.5 | ambient | 298 | |
8 | 3D 1H-15N NOESY | 20 mM sodium phosphate-1, 100 mM sodium chloride-2 | 90% H2O/10% D2O | 0.12 | 6.5 | ambient | 298 | |
9 | 3D HCCH-COSY | 20 mM sodium phosphate-3, 100 mM sodium chloride-4 | 100% D2O | 0.12 | 6.5 | ambient | 298 | |
10 | 3D HCCH-TOCSY | 20 mM sodium phosphate-3, 100 mM sodium chloride-4 | 100% D2O | 0.12 | 6.5 | ambient | 298 | |
11 | 3D 1H-13C NOESY | 20 mM sodium phosphate-3, 100 mM sodium chloride-4 | 100% D2O | 0.12 | 6.5 | ambient | 298 |
NMR Spectrometer Information | |||
---|---|---|---|
Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | DMX | 500 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
simulated annealing | CNS |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 150 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (closest to the average) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | chemical shift calculation | CNS | Brunger, Adams, Clore, Gros, Nilges and Read | |
2 | data analysis | CNS | Brunger, Adams, Clore, Gros, Nilges and Read | |
3 | collection | Sparky | Goddard | |
4 | chemical shift assignment | Sparky | Goddard | |
5 | refinement | CNS | Brunger, Adams, Clore, Gros, Nilges and Read |