2L7F
Solution Structure of the Pitx2 Homeodomain
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-15N HSQC | 10 mM sodium phosphate, 150 mM sodium sulphate, 1 mM EDTA, 2 mM [U-98% 13C; U-98% 15N] Pitx2 Homeodomain | 90% H2O/10% D2O | 150 | 7.0 | ambient | 295 | |
2 | 2D 1H-13C HSQC aromatic | 10 mM sodium phosphate, 150 mM sodium sulphate, 1 mM EDTA, 2 mM [U-98% 13C; U-98% 15N] Pitx2 Homeodomain | 90% H2O/10% D2O | 150 | 7.0 | ambient | 295 | |
3 | 2D 1H-13C HSQC aliphatic | 10 mM sodium phosphate, 150 mM sodium sulphate, 1 mM EDTA, 2 mM [U-98% 13C; U-98% 15N] Pitx2 Homeodomain | 90% H2O/10% D2O | 150 | 7.0 | ambient | 295 | |
4 | 3D 1H-15N NOESY | 10 mM sodium phosphate, 150 mM sodium sulphate, 1 mM EDTA, 2 mM [U-98% 13C; U-98% 15N] Pitx2 Homeodomain | 90% H2O/10% D2O | 150 | 7.0 | ambient | 295 | |
5 | 3D 1H-13C NOESY | 10 mM sodium phosphate, 150 mM sodium sulphate, 1 mM EDTA, 2 mM [U-98% 13C; U-98% 15N] Pitx2 Homeodomain | 90% H2O/10% D2O | 150 | 7.0 | ambient | 295 | |
6 | 3D HNCACB | 10 mM sodium phosphate, 150 mM sodium sulphate, 1 mM EDTA, 2 mM [U-98% 13C; U-98% 15N] Pitx2 Homeodomain | 90% H2O/10% D2O | 150 | 7.0 | ambient | 295 | |
7 | 3D HNCA | 10 mM sodium phosphate, 150 mM sodium sulphate, 1 mM EDTA, 2 mM [U-98% 13C; U-98% 15N] Pitx2 Homeodomain | 90% H2O/10% D2O | 150 | 7.0 | ambient | 295 | |
8 | 3D H(CCO)NH | 10 mM sodium phosphate, 150 mM sodium sulphate, 1 mM EDTA, 2 mM [U-98% 13C; U-98% 15N] Pitx2 Homeodomain | 90% H2O/10% D2O | 150 | 7.0 | ambient | 295 | |
9 | 3D HCCH-TOCSY | 10 mM sodium phosphate, 150 mM sodium sulphate, 1 mM EDTA, 2 mM [U-98% 13C; U-98% 15N] Pitx2 Homeodomain | 90% H2O/10% D2O | 150 | 7.0 | ambient | 295 | |
10 | 3D HN(COCA)CB | 10 mM sodium phosphate, 150 mM sodium sulphate, 1 mM EDTA, 2 mM [U-98% 13C; U-98% 15N] Pitx2 Homeodomain | 90% H2O/10% D2O | 150 | 7.0 | ambient | 295 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Varian | INOVA | 800 |
2 | Varian | INOVA | 600 |
3 | Varian | INOVA | 500 |
4 | Varian | INOVA | 400 |
NMR Refinement | ||
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Method | Details | Software |
torsion angle dynamics | NMRPipe |
NMR Ensemble Information | |
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Conformer Selection Criteria | Lowest energy |
Conformers Calculated Total Number | 20 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (minimized average) |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | processing | NMRPipe | Delaglio, Zhengrong and Bax | |
2 | refinement | Amber | 11 | Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, ... and Kollm |