2LPE
Solution NMR Structure of the KSR1 CA1-CA1a domain
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 3D_15N-edited_NOESY | 2 mM [U-99% 15N] KSR1 CA1-CA1a domain, 20 mM sodium phosphate, 100 mM sodium chloride, 0.5 mM TCEP | 90% H2O/10% D2O | 120 | 6.5 | 1 atm | 298 | |
2 | 3D_13C-edited_NOESY | 2 mM [U-99% 13C; U-99% 15N] KSR1 CA1-CA1a domain, 20 mM sodium phosphate, 100 mM sodium chloride, 0.5 mM TCEP | 90% H2O/10% D2O | 120 | 6.5 | 1 atm | 298 | |
3 | 2D 1H-1H NOESY | 2 mM KSR1 CA1-CA1a domain, 20 mM sodium phosphate, 100 mM sodium chloride, 0.5 mM TCEP | 100% D2O | 120 | 6.5 | 1 atm | 298 | |
4 | 3D HNCA | 2 mM [U-99% 13C; U-99% 15N] KSR1 CA1-CA1a domain, 20 mM sodium phosphate, 100 mM sodium chloride, 0.5 mM TCEP | 90% H2O/10% D2O | 120 | 6.5 | 1 atm | 298 | |
5 | 3D HNCACB | 2 mM [U-99% 13C; U-99% 15N] KSR1 CA1-CA1a domain, 20 mM sodium phosphate, 100 mM sodium chloride, 0.5 mM TCEP | 90% H2O/10% D2O | 120 | 6.5 | 1 atm | 298 | |
6 | 3D HBHA(CO)NH | 2 mM [U-99% 13C; U-99% 15N] KSR1 CA1-CA1a domain, 20 mM sodium phosphate, 100 mM sodium chloride, 0.5 mM TCEP | 90% H2O/10% D2O | 120 | 6.5 | 1 atm | 298 | |
7 | 3D HNCO | 2 mM [U-99% 13C; U-99% 15N] KSR1 CA1-CA1a domain, 20 mM sodium phosphate, 100 mM sodium chloride, 0.5 mM TCEP | 90% H2O/10% D2O | 120 | 6.5 | 1 atm | 298 | |
8 | 3D HN(CA)CO | 2 mM [U-99% 13C; U-99% 15N] KSR1 CA1-CA1a domain, 20 mM sodium phosphate, 100 mM sodium chloride, 0.5 mM TCEP | 90% H2O/10% D2O | 120 | 6.5 | 1 atm | 298 | |
9 | 3D H(CCO)NH | 2 mM [U-99% 13C; U-99% 15N] KSR1 CA1-CA1a domain, 20 mM sodium phosphate, 100 mM sodium chloride, 0.5 mM TCEP | 90% H2O/10% D2O | 120 | 6.5 | 1 atm | 298 | |
10 | 3D HCCH-TOCSY | 2 mM [U-99% 13C; U-99% 15N] KSR1 CA1-CA1a domain, 20 mM sodium phosphate, 100 mM sodium chloride, 0.5 mM TCEP | 90% H2O/10% D2O | 120 | 6.5 | 1 atm | 298 | |
11 | 3D CBCA(CO)NH | 2 mM [U-99% 13C; U-99% 15N] KSR1 CA1-CA1a domain, 20 mM sodium phosphate, 100 mM sodium chloride, 0.5 mM TCEP | 90% H2O/10% D2O | 120 | 6.5 | 1 atm | 298 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE | 800 |
2 | Bruker | AVANCE | 500 |
NMR Refinement | ||
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Method | Details | Software |
CNS water refinement using RECOORD scripts | CNS |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 10 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | refinement | CNS | 1.3 | Brunger A. T. et.al. |
2 | structure solution | CYANA | 2.1 | Guntert, Mumenthaler and Wuthrich |
3 | collection | TopSpin | 1.3 | Bruker Biospin |
4 | processing | TopSpin | 1.3 | Bruker Biospin |
5 | peak picking | CARA | Keller and Wuthrich | |
6 | chemical shift assignment | CARA | Keller and Wuthrich |