2M83
Solution structure of the carbohydrate binding module of the muscle glycogen-targeting subunit of Protein Phosphatase-1
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-15N HSQC | 0.8 mM [U-99% 15N] GM CBM21, 20 mM sodium phosphate, 50 mM sodium chloride, 10 mM DTT | 90% H2O/10% D2O | 70 | 6.5 | ambient | 298 | |
2 | 3D HNCACB | 0.8 mM [U-99% 13C; U-99% 15N] GM CBM21, 20 mM sodium phosphate, 50 mM sodium chloride, 10 mM DTT | 90% H2O/10% D2O | 70 | 6.5 | ambient | 298 | |
3 | 3D CBCA(CO)NH | 0.8 mM [U-99% 13C; U-99% 15N] GM CBM21, 20 mM sodium phosphate, 50 mM sodium chloride, 10 mM DTT | 90% H2O/10% D2O | 70 | 6.5 | ambient | 298 | |
4 | 3D HNCA | 0.8 mM [U-99% 13C; U-99% 15N] GM CBM21, 20 mM sodium phosphate, 50 mM sodium chloride, 10 mM DTT | 90% H2O/10% D2O | 70 | 6.5 | ambient | 298 | |
5 | 3D (H)CC(CO)NH | 0.8 mM [U-99% 13C; U-99% 15N] GM CBM21, 20 mM sodium phosphate, 50 mM sodium chloride, 10 mM DTT | 90% H2O/10% D2O | 70 | 6.5 | ambient | 298 | |
6 | 3D HBHA(CO)NH | 0.8 mM [U-99% 13C; U-99% 15N] GM CBM21, 20 mM sodium phosphate, 50 mM sodium chloride, 10 mM DTT | 90% H2O/10% D2O | 70 | 6.5 | ambient | 298 | |
7 | 3D HCCH-TOCSY | 0.8 mM [U-99% 13C; U-99% 15N] GM CBM21, 20 mM sodium phosphate, 50 mM sodium chloride, 10 mM DTT | 90% H2O/10% D2O | 70 | 6.5 | ambient | 298 | |
8 | 2D 1H-1H NOESY | 0.8 mM GM CBM21, 20 mM sodium phosphate, 50 mM sodium chloride, 10 mM DTT | 100% D2O | 70 | 6.5 | ambient | 298 | |
9 | 2D 1H-1H TOCSY | 0.8 mM GM CBM21, 20 mM sodium phosphate, 50 mM sodium chloride, 10 mM DTT | 100% D2O | 70 | 6.5 | ambient | 298 | |
10 | 2D 1H-1H COSY | 0.8 mM GM CBM21, 20 mM sodium phosphate, 50 mM sodium chloride, 10 mM DTT | 100% D2O | 70 | 6.5 | ambient | 298 | |
11 | 3D 1H-15N NOESY | 0.8 mM [U-99% 15N] GM CBM21, 20 mM sodium phosphate, 50 mM sodium chloride, 10 mM DTT | 90% H2O/10% D2O | 70 | 6.5 | ambient | 298 | |
12 | 3D 1H-13C NOESY | 0.8 mM [U-99% 13C; U-99% 15N] GM CBM21, 20 mM sodium phosphate, 50 mM sodium chloride, 10 mM DTT | 90% H2O/10% D2O | 70 | 6.5 | ambient | 298 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE | 500 |
2 | Bruker | AVANCE | 800 |
NMR Refinement | ||
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Method | Details | Software |
simulated annealing | RECOORD scripts were used (Nederveen et al. Proteins. 2005.) | CNS |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 200 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | refinement | CNS | Brunger A. T. et.al. | |
2 | chemical shift assignment | CARA | Keller and Wuthrich | |
3 | peak picking | CARA | Keller and Wuthrich | |
4 | collection | TopSpin | Bruker Biospin | |
5 | processing | TopSpin | Bruker Biospin | |
6 | structure solution | CYANA_2.1 | Guntert, Mumenthaler and Wuthrich |